Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,099,226 – 3,099,318 |
Length | 92 |
Max. P | 0.833317 |
Location | 3,099,226 – 3,099,318 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 77.63 |
Mean single sequence MFE | -18.21 |
Consensus MFE | -9.28 |
Energy contribution | -9.48 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.05 |
Structure conservation index | 0.51 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.833317 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3099226 92 + 22407834 ACCUU----UU------------------UUCUUUUAAAUUUAUCUGGAAUUCCCUCUUACUUAACCUUAAGCUGUUUGCCCCGUUUGUCACAAAAAAGGUGAUGGCUUAUCAU .....----..------------------.................((....))..............(((((((.(..((...((((...))))...))..)))))))).... ( -11.80) >DroSec_CAF1 24479 109 + 1 ACCUU----UUCAGCCAUUGCCAGGCUCUUUUAUUUAUAUUUAUCUGGAAUUUCCUCUUAUUUAACAUAAAGUUGUUUGCCCCCUUUGUCACCAA-AAGGUGAUGGCUUAUCAU .....----...((((((..((.(((.......(((((.((.....(((......))).....)).))))).......)))...((((....)))-).))..))))))...... ( -22.54) >DroSim_CAF1 24615 109 + 1 ACCUU----UUUAGCCAUUGCCAGGUUCUUUUAUUUAUAUUUAUCUGGAAUUUUCUCUUAUUUAACAUUAAGUUGUUUGCCCCCUUUGUCACCAA-AAGGUGAUGGCUUAUCAU .....----...((((((..((.(((......(((((...(((...(((......)))....)))...))))).....)))...((((....)))-).))..))))))...... ( -20.30) >DroEre_CAF1 24744 113 + 1 ACAUUUCACUAUAGCCACAGUCAGACUCUUUCAUUUAUAUUUAUCUUGAAUUUCCUCUAAUUUAACCUUAAGUUGUUUGCCUCUUUUGUCACCGA-AAGGUGAUGGCUUAUCUU ............((((..((.(((((............(((((..(((((((......)))))))...))))).))))).)).....((((((..-..))))))))))...... ( -22.52) >DroYak_CAF1 25337 113 + 1 ACUAUAUAUUAUAUUUAUAACCAAACUCUUUCACUUAUAUUUAUCUUGCAUUUUCUCCUAUUUAACCAUAAGUUGUUUGCCCCUUUUGUCACCAA-AAGGUGAUGGCUUAUCAG ...................................................................((((((..((....(((((((....)))-)))).))..))))))... ( -13.90) >consensus ACCUU____UUUAGCCAUAGCCAGACUCUUUCAUUUAUAUUUAUCUGGAAUUUCCUCUUAUUUAACCUUAAGUUGUUUGCCCCCUUUGUCACCAA_AAGGUGAUGGCUUAUCAU ..............................................................................(((......((((((.....)))))))))....... ( -9.28 = -9.48 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:37 2006