Locus 1137

Sequence ID 2L_DroMel_CAF1
Location 3,098,818 – 3,098,915
Length 97
Max. P 0.513887
window1849

overview

Window 9

Location 3,098,818 – 3,098,915
Length 97
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 76.75
Mean single sequence MFE -24.08
Consensus MFE -13.84
Energy contribution -13.57
Covariance contribution -0.28
Combinations/Pair 1.26
Mean z-score -1.47
Structure conservation index 0.57
SVM decision value -0.04
SVM RNA-class probability 0.513887
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3098818 97 - 22407834
UUUCCAUGUCCA------UGUCCAGCACAAUUAGCCGUCAGCUGGAA-UA-AAUUUAUUACGUUGUCCAUGCCGCAGACGCUUCUGUGGUCAACUCGGAAAUGCA
....(((.(((.------..((((((((........))..)))))).-..-..........((((.....((((((((....))))))))))))..))).))).. ( -27.00)
>DroPse_CAF1 25077 89 - 1
UUUCCCUGUCCAUGUCCAUGUCCAGCACAAUUAGCCGACAGCUAAAAAUAAAAUUUAUUAGGUUUUCCCUGCAGCUGCC------GCUGCC----------UGCA
......((..(((....)))..))(((...(((((.....)))))..............(((.....)))(((((....------))))).----------))). ( -17.30)
>DroEre_CAF1 24268 98 - 1
UUUCCAUGUCCA------UGUCCAGCACAAUUAGCCGUCAGCUGAAA-UACAAUUUAUUGCGUUGUCCAGGCCGCAGCUGCUUCUGUGGUCAACUCGGAAAUGCA
....(((.(((.------((..((((.((((((((.....)))))..-.........))).))))..))((((((((......)))))))).....))).))).. ( -27.20)
>DroYak_CAF1 24865 98 - 1
UUUCCAUGUCCA------UGUCCAGCACAAUUAGCCGUCAGCUGAAA-UACAAUUUAUUACGUUGUCCAGGCCGCAGCUGCUUCUGUGGUCAACUCGGAAAUGCA
....(((.(((.------((..((((....(((((.....)))))((-((.....))))..))))..))((((((((......)))))))).....))).))).. ( -26.20)
>DroAna_CAF1 26476 98 - 1
UUUCCAUGUCCA------UGUCCAGCACAAUUAGCCGACAGCUAAAAAUA-AAUUUAUUACGUUGUCUGAGGAGCAGCAGCUGCUGAUGUAGUGUUUGGUGUGGA
........((((------(..(.(((((.((((((.(((((((((.((..-...)).))).)))))).....(((....)))))))))...))))).)..))))) ( -28.70)
>DroPer_CAF1 24858 89 - 1
UUUCCCUGUCCA------UGUCCAGCACAAUUAGCCGACAGCUAAAAAUACAAUUUAUUAGGUUUUCCCUGCAGCUGCCGCUGCCGCUGCC----------UGCA
.....(((....------....)))........((.(.((((.................(((.....)))(((((....))))).)))).)----------.)). ( -18.10)
>consensus
UUUCCAUGUCCA______UGUCCAGCACAAUUAGCCGACAGCUAAAA_UACAAUUUAUUACGUUGUCCAUGCAGCAGCCGCUUCUGUGGUCAACUCGGAAAUGCA
......((..((......))..))(((...(((((.....))))).........................(((((((......)))))))...........))). (-13.84 = -13.57 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:36 2006