Locus 1136

Sequence ID 2L_DroMel_CAF1
Location 3,097,152 – 3,097,245
Length 93
Max. P 0.733240
window1848

overview

Window 8

Location 3,097,152 – 3,097,245
Length 93
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 77.05
Mean single sequence MFE -23.87
Consensus MFE -13.88
Energy contribution -14.35
Covariance contribution 0.47
Combinations/Pair 1.12
Mean z-score -1.68
Structure conservation index 0.58
SVM decision value 0.43
SVM RNA-class probability 0.733240
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3097152 93 - 22407834
GCAGAGUACAUGUUGCCACAUGUGCCUGCGAAUUCUGCGCAAAUUUGGCUCCGUUGACUCAUUCAUUCCCUGUGAGUCAUCUUAAAUCCCCCA
((((.((((((((....)))))))))))).......((.((....))))...(.((((((((.........)))))))).)............ ( -27.00)
>DroSec_CAF1 22384 93 - 1
GCAGAGUACAUGUUGCCACAUGUGCCUGCGAAUUCUGCGCAAAUUCGGCUCCGUUGACUCAUUCACUCCCUGUUAGUCAUCUUAAAUCCCCCA
((((.((((((((....))))))))))))(((((.......)))))((......(((((.((.........)).)))))........)).... ( -21.54)
>DroSim_CAF1 22439 89 - 1
GCAGAGUACAUGUUGCCACAUGUGCCUGCGAAUUCUGCGCCAAUUCGGCUCCGUUGACUCAUU----CCCUGUGAGUCAUCUUAAAUCCCCCA
((((.((((((((....)))))))))))).........(((.....)))...(.((((((((.----....)))))))).)............ ( -31.00)
>DroEre_CAF1 22418 86 - 1
GCGAUGUA--UGUUGCCAUCUGUGCCUGUGAGUUCUGCGCAAAUUUGGCUCCGUUGACUCACU----CGCGGUGAGUCAUCUUGAAUCCCCC-
..(((..(--((..((((..(((((..(......).)))))....))))..)))((((((((.----....))))))))......)))....- ( -24.30)
>DroYak_CAF1 23040 84 - 1
GCGAAGUA--U---ACCAUAUGUGCCUGUGAAUUCUGCGCAAAUUCGGCUCCGUUGACUCACU----CGCUGUGAGUCAUCUUGAGUCCCCCA
(((.((..--.---..((((......))))....)).)))......(((((...((((((((.----....))))))))....)))))..... ( -24.50)
>DroPer_CAF1 22544 77 - 1
AGGUAAUC---UGUGCAAAAUGUGC-UGGAAAUUGUGCACAAAUUUGGCAUCGUUGACUCAUU----C-CCGUGACUCAUCCCGAG-------
.(.(((..---((((((.(((....-.....))).))))))...))).).(((.(((.((((.----.-..)))).)))...))).------- ( -14.90)
>consensus
GCAGAGUA__UGUUGCCACAUGUGCCUGCGAAUUCUGCGCAAAUUCGGCUCCGUUGACUCAUU____CCCUGUGAGUCAUCUUAAAUCCCCCA
..............(((...(((((...........))))).....)))...(.((((((((.........)))))))).)............ (-13.88 = -14.35 +   0.47) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:35 2006