Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,097,152 – 3,097,245 |
Length | 93 |
Max. P | 0.733240 |
Location | 3,097,152 – 3,097,245 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 77.05 |
Mean single sequence MFE | -23.87 |
Consensus MFE | -13.88 |
Energy contribution | -14.35 |
Covariance contribution | 0.47 |
Combinations/Pair | 1.12 |
Mean z-score | -1.68 |
Structure conservation index | 0.58 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.733240 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3097152 93 - 22407834 GCAGAGUACAUGUUGCCACAUGUGCCUGCGAAUUCUGCGCAAAUUUGGCUCCGUUGACUCAUUCAUUCCCUGUGAGUCAUCUUAAAUCCCCCA ((((.((((((((....)))))))))))).......((.((....))))...(.((((((((.........)))))))).)............ ( -27.00) >DroSec_CAF1 22384 93 - 1 GCAGAGUACAUGUUGCCACAUGUGCCUGCGAAUUCUGCGCAAAUUCGGCUCCGUUGACUCAUUCACUCCCUGUUAGUCAUCUUAAAUCCCCCA ((((.((((((((....))))))))))))(((((.......)))))((......(((((.((.........)).)))))........)).... ( -21.54) >DroSim_CAF1 22439 89 - 1 GCAGAGUACAUGUUGCCACAUGUGCCUGCGAAUUCUGCGCCAAUUCGGCUCCGUUGACUCAUU----CCCUGUGAGUCAUCUUAAAUCCCCCA ((((.((((((((....)))))))))))).........(((.....)))...(.((((((((.----....)))))))).)............ ( -31.00) >DroEre_CAF1 22418 86 - 1 GCGAUGUA--UGUUGCCAUCUGUGCCUGUGAGUUCUGCGCAAAUUUGGCUCCGUUGACUCACU----CGCGGUGAGUCAUCUUGAAUCCCCC- ..(((..(--((..((((..(((((..(......).)))))....))))..)))((((((((.----....))))))))......)))....- ( -24.30) >DroYak_CAF1 23040 84 - 1 GCGAAGUA--U---ACCAUAUGUGCCUGUGAAUUCUGCGCAAAUUCGGCUCCGUUGACUCACU----CGCUGUGAGUCAUCUUGAGUCCCCCA (((.((..--.---..((((......))))....)).)))......(((((...((((((((.----....))))))))....)))))..... ( -24.50) >DroPer_CAF1 22544 77 - 1 AGGUAAUC---UGUGCAAAAUGUGC-UGGAAAUUGUGCACAAAUUUGGCAUCGUUGACUCAUU----C-CCGUGACUCAUCCCGAG------- .(.(((..---((((((.(((....-.....))).))))))...))).).(((.(((.((((.----.-..)))).)))...))).------- ( -14.90) >consensus GCAGAGUA__UGUUGCCACAUGUGCCUGCGAAUUCUGCGCAAAUUCGGCUCCGUUGACUCAUU____CCCUGUGAGUCAUCUUAAAUCCCCCA ..............(((...(((((...........))))).....)))...(.((((((((.........)))))))).)............ (-13.88 = -14.35 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:35 2006