Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,094,768 – 3,094,861 |
Length | 93 |
Max. P | 0.947094 |
Location | 3,094,768 – 3,094,861 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 94.07 |
Mean single sequence MFE | -29.10 |
Consensus MFE | -24.88 |
Energy contribution | -24.24 |
Covariance contribution | -0.64 |
Combinations/Pair | 1.12 |
Mean z-score | -1.73 |
Structure conservation index | 0.85 |
SVM decision value | 1.37 |
SVM RNA-class probability | 0.947094 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3094768 93 + 22407834 UAUCAAUGCACCUGAACGCUCAAGUGGCAGGGAGCGCAGAAAACGCCAGAAUCUGCAUCUGCAACUGAAUCCGAGUCUGAAUUCGG--CUGGGGA ..(((.((((((((..(((....))).))))((..(((((...........))))).))))))..))).(((.((.(((....)))--)).))). ( -26.10) >DroSec_CAF1 19532 95 + 1 UAUCAAUGCACCUGAACGCUCAAGUGGCAGGGAGCGCAGAAAGCGCAAGAAUCUGCAUCUGCAACUGAAUCCGAAUCUCAAUUCGGUGCUGGGGA ..((...(((((.......(((.((.(((((....(((((...(....)..))))).))))).)))))....((((....)))))))))...)). ( -29.00) >DroSim_CAF1 19598 95 + 1 UAUCAAUGCACCUGAACGCUCAAGUGGCAGGGAGCGCAGAAAGCGCAAGAAUCUGCAUCUGCAACUGAAUCCGAAUCUCAAUUCGGUGCUGGGGA ..((...(((((.......(((.((.(((((....(((((...(....)..))))).))))).)))))....((((....)))))))))...)). ( -29.00) >DroEre_CAF1 19885 93 + 1 UAUCAAUGCACUUGAACGGUCAAGUGGCAGGGAGCGCAGAAAACGCAAGAAUCUGCAUCUGCAACUGAAUCCGAGUCUGAAUUCGG--CUGGGGA ..(((...(((((((....)))))))(((((....(((((...(....)..))))).)))))...))).(((.((.(((....)))--)).))). ( -31.50) >DroYak_CAF1 20508 93 + 1 UAUCAAUGCACUUGAACACUCAAGUGGCAGGGAGCGCAGAAAACGAAAGAAUCUGCAUCUGCAACUGAAUCCGAGUCUGAAUUCGG--CUGGAGA ..(((...(((((((....)))))))(((((....(((((...(....)..))))).)))))...))).(((.((.(((....)))--))))).. ( -29.90) >consensus UAUCAAUGCACCUGAACGCUCAAGUGGCAGGGAGCGCAGAAAACGCAAGAAUCUGCAUCUGCAACUGAAUCCGAGUCUGAAUUCGG__CUGGGGA ..........(((.(....(((.((.(((((....(((((...(....)..))))).))))).)))))..((((((....))))))...).))). (-24.88 = -24.24 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:34 2006