Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,081,494 – 3,081,586 |
Length | 92 |
Max. P | 0.839892 |
Location | 3,081,494 – 3,081,586 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 71.81 |
Mean single sequence MFE | -22.41 |
Consensus MFE | -4.49 |
Energy contribution | -5.68 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.27 |
Mean z-score | -2.69 |
Structure conservation index | 0.20 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.839892 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3081494 92 + 22407834 AUUCACCCAGCUGUGGAUCCA-CCACGC---UUCUCCAGGC----CAAAAAAAAUUACAUGAGUAAUU-----GCUUCGUGGCCGCAAAAAUAACAAAACAAAAA-- ........(((.((((.....-))))))---)......(((----((..((.((((((....))))))-----..))..))))).....................-- ( -21.10) >DroSec_CAF1 6620 97 + 1 AUUCACCCAGCUGUGGAUCCA-CCAUGCUUCUUCUCCAGGC----CAAAAAAAAUUACAUGAGUAAUU-----GCUUCGUGGCCGCAAAAAGACCAAAACAAAAACA ........(((.((((.....-)))))))((((.....(((----((..((.((((((....))))))-----..))..))))).....)))).............. ( -20.90) >DroSim_CAF1 6592 92 + 1 AUUCACGCAGCUGUGGAUCCA-CGUCGC---UUCUCCAGGC----CAAAAAAAAUUACAUGAGUAAUU-----GCUUCGUGGCCGCAAAAAGACCAAAACAAAAA-- ......(((((((((....))-))..))---)......(((----((..((.((((((....))))))-----..))..)))))))...................-- ( -21.90) >DroEre_CAF1 6566 85 + 1 AUUCACCCAGCUGUGGAUCAA-CCACGC---UUCUCCAAA--GGCAAAAAAAGAUUGCUUGAGUAAUU-----GCUUCGUGCCCGCAAAGAAA-------A--AA-- .(((....(((.((((.....-))))))---)........--((((..((..((((((....))))))-----..))..))))......))).-------.--..-- ( -19.20) >DroYak_CAF1 6654 95 + 1 AUUCACCCAGCUGUGGCUCCA-ACACGC---UUCUGCAGGCCAACAGAAAAAAAUUACAUGAGUAAUU-----GCUUCGUGGCCGCAAAGAGG-CAAAACAAAAA-- ............(((......-.)))((---((((...(((((...(((...((((((....))))))-----..))).)))))....)))))-)..........-- ( -27.80) >DroAna_CAF1 9267 85 + 1 AUUCACCUAACUCCGAGUCUAACCUUGC---UG--GCAAGG----GAAAAA-AAG--UAUGAGGCAUCAUGCCACUUCGUGGCGGAGGAAAA--------AAGAC-- ..........((((((((((..(((((.---..--.)))))----......-...--....)))).))..(((((...))))))))).....--------.....-- ( -23.56) >consensus AUUCACCCAGCUGUGGAUCCA_CCACGC___UUCUCCAGGC____CAAAAAAAAUUACAUGAGUAAUU_____GCUUCGUGGCCGCAAAAAGA_CAAAACAAAAA__ ...(((..(((.(((........)))..........................((((((....)))))).....)))..))).......................... ( -4.49 = -5.68 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:33 2006