Locus 1134

Sequence ID 2L_DroMel_CAF1
Location 3,081,494 – 3,081,586
Length 92
Max. P 0.839892
window1846

overview

Window 6

Location 3,081,494 – 3,081,586
Length 92
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 71.81
Mean single sequence MFE -22.41
Consensus MFE -4.49
Energy contribution -5.68
Covariance contribution 1.20
Combinations/Pair 1.27
Mean z-score -2.69
Structure conservation index 0.20
SVM decision value 0.75
SVM RNA-class probability 0.839892
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3081494 92 + 22407834
AUUCACCCAGCUGUGGAUCCA-CCACGC---UUCUCCAGGC----CAAAAAAAAUUACAUGAGUAAUU-----GCUUCGUGGCCGCAAAAAUAACAAAACAAAAA--
........(((.((((.....-))))))---)......(((----((..((.((((((....))))))-----..))..))))).....................-- ( -21.10)
>DroSec_CAF1 6620 97 + 1
AUUCACCCAGCUGUGGAUCCA-CCAUGCUUCUUCUCCAGGC----CAAAAAAAAUUACAUGAGUAAUU-----GCUUCGUGGCCGCAAAAAGACCAAAACAAAAACA
........(((.((((.....-)))))))((((.....(((----((..((.((((((....))))))-----..))..))))).....)))).............. ( -20.90)
>DroSim_CAF1 6592 92 + 1
AUUCACGCAGCUGUGGAUCCA-CGUCGC---UUCUCCAGGC----CAAAAAAAAUUACAUGAGUAAUU-----GCUUCGUGGCCGCAAAAAGACCAAAACAAAAA--
......(((((((((....))-))..))---)......(((----((..((.((((((....))))))-----..))..)))))))...................-- ( -21.90)
>DroEre_CAF1 6566 85 + 1
AUUCACCCAGCUGUGGAUCAA-CCACGC---UUCUCCAAA--GGCAAAAAAAGAUUGCUUGAGUAAUU-----GCUUCGUGCCCGCAAAGAAA-------A--AA--
.(((....(((.((((.....-))))))---)........--((((..((..((((((....))))))-----..))..))))......))).-------.--..-- ( -19.20)
>DroYak_CAF1 6654 95 + 1
AUUCACCCAGCUGUGGCUCCA-ACACGC---UUCUGCAGGCCAACAGAAAAAAAUUACAUGAGUAAUU-----GCUUCGUGGCCGCAAAGAGG-CAAAACAAAAA--
............(((......-.)))((---((((...(((((...(((...((((((....))))))-----..))).)))))....)))))-)..........-- ( -27.80)
>DroAna_CAF1 9267 85 + 1
AUUCACCUAACUCCGAGUCUAACCUUGC---UG--GCAAGG----GAAAAA-AAG--UAUGAGGCAUCAUGCCACUUCGUGGCGGAGGAAAA--------AAGAC--
..........((((((((((..(((((.---..--.)))))----......-...--....)))).))..(((((...))))))))).....--------.....-- ( -23.56)
>consensus
AUUCACCCAGCUGUGGAUCCA_CCACGC___UUCUCCAGGC____CAAAAAAAAUUACAUGAGUAAUU_____GCUUCGUGGCCGCAAAAAGA_CAAAACAAAAA__
...(((..(((.(((........)))..........................((((((....)))))).....)))..))).......................... ( -4.49 =  -5.68 +   1.20) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:33 2006