Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,079,737 – 3,079,840 |
Length | 103 |
Max. P | 0.710200 |
Location | 3,079,737 – 3,079,840 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 79.14 |
Mean single sequence MFE | -25.76 |
Consensus MFE | -13.00 |
Energy contribution | -14.88 |
Covariance contribution | 1.88 |
Combinations/Pair | 1.10 |
Mean z-score | -2.02 |
Structure conservation index | 0.50 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.710200 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3079737 103 + 22407834 UACGUAAAUCAAUUGUGGUUGAGAAGUCAGCAGACAAACAUCAUCAUAAAUCGAUUUAUGAUGUGCGUAGAUGAUGUCUGUAGAGAUGGUCCUUCUCCGCCAA ...............((((.((((((((.(((((((..((((((((((((....)))))))).......)))).))))))).)).......)))))).)))). ( -28.62) >DroSec_CAF1 4828 102 + 1 UACCUAAAUCAAUUGUGGUUGAGAAGCCAGCAGACAAACAUCAUCAUAAAUCGAUUUAUGAUUUGCGUAGAUGAUGUC-GUAGAGACGGUCCUUCUCCGCCAA ...............((((.((((((......(((..((((((((.(((((((.....)))))))....))))))))(-((....)))))))))))).)))). ( -26.70) >DroSim_CAF1 4820 103 + 1 UACCUAAAUCAAUUGUGGUUGAGAAGUCAGCAGACAAACAUCAUCAUAAAUCGAUUUAUGAUGUGUGUAGAUGAUGUCUGUAGAGGCGGUCCUUCUCCGCCAA ........(((((....)))))....((.(((((((.(((((((((((((....))))))))).))))......))))))).))(((((.......))))).. ( -31.40) >DroEre_CAF1 4801 96 + 1 UGCCUAAAUCAAUUGUGGUUGAGAAGUCAGCAGACGAACAU---CAUAAAUCGAUUUAUGGUGUACCUGGUUGAUGUCUGGAG---CGGU-CUUCUCCGCCAA ...............((((.((((((.(.((......((((---((((((....))))))))))..(..(.......)..).)---).).-)))))).)))). ( -28.10) >DroYak_CAF1 4828 81 + 1 UACCUAAAUCAAUUGUGGUCGAAAAGUCAGCAGACAAACAUCAUCAUAAAUCGAUUUAUGAUGUACCCA-----UACUCG-----------------UACUCG .............(((((.......(((....)))......(((((((((....)))))))))...)))-----))....-----------------...... ( -14.00) >consensus UACCUAAAUCAAUUGUGGUUGAGAAGUCAGCAGACAAACAUCAUCAUAAAUCGAUUUAUGAUGUGCGUAGAUGAUGUCUGUAGAG_CGGUCCUUCUCCGCCAA ...............((((.((((((((....)))......(((((((((....))))))))).............................))))).)))). (-13.00 = -14.88 + 1.88)
Location | 3,079,737 – 3,079,840 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 79.14 |
Mean single sequence MFE | -24.48 |
Consensus MFE | -12.78 |
Energy contribution | -15.06 |
Covariance contribution | 2.28 |
Combinations/Pair | 1.19 |
Mean z-score | -1.88 |
Structure conservation index | 0.52 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.580533 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3079737 103 - 22407834 UUGGCGGAGAAGGACCAUCUCUACAGACAUCAUCUACGCACAUCAUAAAUCGAUUUAUGAUGAUGUUUGUCUGCUGACUUCUCAACCACAAUUGAUUUACGUA .(((..((((((...((.(...((((((((((((.......(((.......)))....))))))))))))..).)).))))))..)))............... ( -27.90) >DroSec_CAF1 4828 102 - 1 UUGGCGGAGAAGGACCGUCUCUAC-GACAUCAUCUACGCAAAUCAUAAAUCGAUUUAUGAUGAUGUUUGUCUGCUGGCUUCUCAACCACAAUUGAUUUAGGUA .(((..((((((..(((.(...((-(((((((((.....(((((.......)))))..))))))).))))..).)))))))))..)))............... ( -26.40) >DroSim_CAF1 4820 103 - 1 UUGGCGGAGAAGGACCGCCUCUACAGACAUCAUCUACACACAUCAUAAAUCGAUUUAUGAUGAUGUUUGUCUGCUGACUUCUCAACCACAAUUGAUUUAGGUA .(((..((((((..(.((....((((((((((((.......(((.......)))....))))))))))))..)).).))))))..)))............... ( -29.10) >DroEre_CAF1 4801 96 - 1 UUGGCGGAGAAG-ACCG---CUCCAGACAUCAACCAGGUACACCAUAAAUCGAUUUAUG---AUGUUCGUCUGCUGACUUCUCAACCACAAUUGAUUUAGGCA .(((..((((((-....---(..((((((((.....)))(((.((((((....))))))---.)))..)))))..).))))))..)))............... ( -23.20) >DroYak_CAF1 4828 81 - 1 CGAGUA-----------------CGAGUA-----UGGGUACAUCAUAAAUCGAUUUAUGAUGAUGUUUGUCUGCUGACUUUUCGACCACAAUUGAUUUAGGUA .((((.-----------------(((...-----(((...(((((((((....)))))))))......(((....))).......)))...)))))))..... ( -15.80) >consensus UUGGCGGAGAAGGACCG_CUCUACAGACAUCAUCUACGCACAUCAUAAAUCGAUUUAUGAUGAUGUUUGUCUGCUGACUUCUCAACCACAAUUGAUUUAGGUA .(((..((((((...........((((((((..........((((((((....))))))))))))))))((....))))))))..)))............... (-12.78 = -15.06 + 2.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:32 2006