Locus 1132

Sequence ID 2L_DroMel_CAF1
Location 3,079,493 – 3,079,596
Length 103
Max. P 0.902297
window1843

overview

Window 3

Location 3,079,493 – 3,079,596
Length 103
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 88.50
Mean single sequence MFE -31.60
Consensus MFE -24.88
Energy contribution -24.92
Covariance contribution 0.04
Combinations/Pair 1.03
Mean z-score -1.99
Structure conservation index 0.79
SVM decision value 1.02
SVM RNA-class probability 0.902297
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3079493 103 - 22407834
GCAGAA---------------UGCUGUCAGGAUAAUGGAAACAAUUGCCAGGACCAAGCUGCUGCUGCUGCUUCAGCUGGAAAAUCAACCGAUUUAGGCGGUCUUAUGCAAGCUGAAA
.(((..---------------(((....(((((..((....))..((((....(((.((((..((....))..))))))).(((((....))))).)))))))))..)))..)))... ( -32.30)
>DroSec_CAF1 4604 100 - 1
GCAGAA---------------UGCUGUCAGGAUAAUGGAAACAAUUGCCAGGACCAAGCUGCU---GCUGCUUCAGCUGGAAAAUCAACCGAUUUAGCCGGUCUUACGCAAGCUGAAA
((((..---------------.((((((.((....((....))....))..)))..)))..))---))...(((((((.........((((.......))))........))))))). ( -29.83)
>DroSim_CAF1 4596 100 - 1
GCAGAA---------------UGCUGUCAGGAUAAUGGAAACAAUUGCCAGGACCAAGCUGCU---GCUGCUUCAGCUGGAAAAUCAACCGAUUUAGCCGGUCUUACGCAAGCUGAAA
((((..---------------.((((((.((....((....))....))..)))..)))..))---))...(((((((.........((((.......))))........))))))). ( -29.83)
>DroEre_CAF1 4566 99 - 1
GCAGCAUG----------------UGUCAGGAUAAUGGAAACAAUUGCCAGGACCAAGCUGCU---GCUGCUUCAGCCGGAAAAUCAACCGAUUUAGCCGGUCUUACGCAAGCUGAAA
(((((.((----------------.(((.((....((....))....))..))))).))))).---(((((...((((((.(((((....)))))..)))).))...)).)))..... ( -34.20)
>DroYak_CAF1 4577 114 - 1
GCAACACAUGCACAUGCAGAAUGCUGUCAGGAUAAUGGAAACAAUUGC-AGGACCAAGCUGCU---GCUGUUUCAGCUGGAAAAUCAACCGAUUUAGCCGGUCUUACGCAAGCUGAGA
(((.....)))(((.((((...((((((..(....((....))....)-..)))..)))..))---)))))(((((((.........((((.......))))........))))))). ( -31.83)
>consensus
GCAGAA_______________UGCUGUCAGGAUAAUGGAAACAAUUGCCAGGACCAAGCUGCU___GCUGCUUCAGCUGGAAAAUCAACCGAUUUAGCCGGUCUUACGCAAGCUGAAA
..........................((((.....((....)).((((.((((((((((.((....)).)))).....((.(((((....)))))..))))))))..)))).)))).. (-24.88 = -24.92 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:30 2006