Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,071,875 – 3,071,971 |
Length | 96 |
Max. P | 0.859130 |
Location | 3,071,875 – 3,071,971 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 78.21 |
Mean single sequence MFE | -31.58 |
Consensus MFE | -19.60 |
Energy contribution | -20.02 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.26 |
Mean z-score | -1.84 |
Structure conservation index | 0.62 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.859130 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3071875 96 + 22407834 AGU-UUGCGCGGAAGUCGCACAAAGGCAAAUUGUUGAGUGGCAAUGUCGCGGAGACAAUGUCUCU-------GAGCCAGGGAAUUUCCGCGGCAAGACAAU------GGC .((-((((((....).)))..........((((((....))))))((((((((((.....(((((-------(...)))))).)))))))))).))))...------... ( -32.60) >DroSec_CAF1 2176 96 + 1 AGU-UUGCGCGGAAGUCGAACAAAGGCAAAUUGCUGAGUGGCAAUGUCGCGGAGACAAUGUCUCU-------GAGCCAGGGAAUUUCCGCGGCAAGACAAU------GGC .((-(((.((....)))))))....((..((((((....))))))((((((((((.....(((((-------(...)))))).))))))))))........------.)) ( -34.90) >DroSim_CAF1 2131 96 + 1 AGU-UUGCGCGGAGGUCGCACAAAGGCAAAUUUUUGAGUGGCAAUGUCGCGGAGACAAUGUCUCU-------GAGCCAGGGAAUUUCCGCGGCAAGACAAU------GGC .((-((........(((((.((((((....)))))).)))))..(((((((((((.....(((((-------(...)))))).)))))))))))))))...------... ( -33.30) >DroEre_CAF1 2107 82 + 1 AGU-UUGCGCGGAAGUCGGACAAAGCCGAAUUGUUGAGUGGUAA--------------UGCCUCU-------GAGCCAGGGAAUUUCCGCGGGAGGACAAU------GGC .((-((.((((((((((((......))))...(((.((.((...--------------..)).))-------.))).......))))))))...))))...------... ( -25.90) >DroYak_CAF1 2133 82 + 1 AGU-UUGCGCGGAAGUCGCACAAAGGCAAAUUGUUGAGUGGCAA--------------UGUCUUU-------GAGCCAGGGAAAUUCCGCGGGAAGACAAU------GGC ..(-((.(((((((.((((.((((((((..(((((....)))))--------------)))))))-------).))...))...))))))).)))......------... ( -27.30) >DroAna_CAF1 4340 108 + 1 AGUUUUGCGCGGAAGUCGCACAAAAGGCGACAUUUGAGUGGCAAUCUUGCGGAGACAAUGUCUCUGACCUCUGAUCCGGGGAAUU-CCGCCAG-GGACAAUGAUAGAGGU .((((((.(((((((((((.((((.(....).)))).))))).......(((((((...))))))).((((......))))..))-)))))).-))))............ ( -35.50) >consensus AGU_UUGCGCGGAAGUCGCACAAAGGCAAAUUGUUGAGUGGCAAUGUCGCGGAGACAAUGUCUCU_______GAGCCAGGGAAUUUCCGCGGCAAGACAAU______GGC .......(((((((((....(...(((.........((.((((.((((.....)))).)))).)).........)))..)..)))))))))................... (-19.60 = -20.02 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:29 2006