Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,070,918 – 3,071,038 |
Length | 120 |
Max. P | 0.735434 |
Location | 3,070,918 – 3,071,038 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.50 |
Mean single sequence MFE | -48.52 |
Consensus MFE | -29.90 |
Energy contribution | -32.07 |
Covariance contribution | 2.17 |
Combinations/Pair | 1.16 |
Mean z-score | -1.91 |
Structure conservation index | 0.62 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.735434 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3070918 120 + 22407834 CUUUCAUGAAUCAGAUCCGCCUUGGCCUUGCUAAGGGCGGAAAUCUCCGCCUGCUUGAGCUCAAGCACACAGCGCAAGCUGUCUGCCUCGCUGGUCAAGCGGUUGAGUUCGGCGGACGCG ...............(((((((((((...)))))(((((((....)))))))....(((((((((((.(((((....))))).))).(((((.....))))))))))))))))))).... ( -56.20) >DroSim_CAF1 1163 120 + 1 CUUUCAUGAAUCAAAUCCGCCUUGGCCUUGCUGAGGGCGGAAAUCUCCGCCUGCUUGAGCUCAAGCACACAGCGCAAGCUGUCGGCCUCGCUGGUCAAGCGGUUGAGUUCGGCGGACGCG ...............(((((((..((...))..)(((((((....)))))))....((((((((.(.((((((....))))).((((.....))))..).).)))))))))))))).... ( -53.90) >DroEre_CAF1 1137 120 + 1 CUUUCAUGAAUCAGAUCCGCCUUGGCCUUGCUGAGGGCGGAGAUCUCCGCCUGCUUCAGCUCCAGCACGCAGCGCAGGCUGUCGGCCUCGCUGGUCAAGCGGUUGAGUUCGGCGGACGCG ......(((((..((.((((.((((((.(((((.(((((((....)))))))((....))..)))))...((((.((((.....))))))))))))))))))))..)))))((....)). ( -53.30) >DroWil_CAF1 1359 117 + 1 UUCUCCCGCCUGAGAUCCUCAUUGGCUUUGGUUAGUGUGGAUAUCUCUGCCUGCUUCAGCUCCAAUACACAACGCAGGCUAUCAGCCUCGCUGGUUAGACGCCUCAGUUCGGCAU---UG .....(((.(((((((((.(((((((....))))))).))))...(((((((((...................)))))).((((((...)))))).)))...)))))..)))...---.. ( -36.41) >DroYak_CAF1 1162 120 + 1 CUCUCAUGAAUCAGAUCCGCCUUGGCCUUGCUGAGGGCAGAGAUCUCCGCCUGCUUGAGCUCAAGCACGCAGCGCAGGCUGUCGGCCUCGCUGGUCAGGCGAUUGAGUUCGGCGGAUGCG ..............(((((((...(((((....)))))...((.(((((((((((((....)))))((.(((((.((((.....))))))))))).)))))...))).)))))))))... ( -53.20) >DroAna_CAF1 3383 120 + 1 UUCUCCCGGACCAGGUCCGCAUUGGCCUUUGAAAGGUUGGAGAUCUCUGCCUGCUUAAGCUCCAAUACGCACCGUAGGCUGUCUGCCUCGCUGUUCAAACGUAUCAGCUCGGCACUGGAG .((((((((((...)))))....(((((.....)))))))))).((((((((((....((........))...))))))....((((..((((..(....)...))))..))))..)))) ( -38.10) >consensus CUCUCAUGAAUCAGAUCCGCCUUGGCCUUGCUGAGGGCGGAGAUCUCCGCCUGCUUGAGCUCAAGCACACAGCGCAGGCUGUCGGCCUCGCUGGUCAAGCGGUUGAGUUCGGCGGACGCG ...............((((((((..........))))))))....((((((.((((((.(......((.(((((.((((.....))))))))))).....).))))))..)))))).... (-29.90 = -32.07 + 2.17)
Location | 3,070,918 – 3,071,038 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.50 |
Mean single sequence MFE | -47.13 |
Consensus MFE | -29.31 |
Energy contribution | -29.01 |
Covariance contribution | -0.30 |
Combinations/Pair | 1.28 |
Mean z-score | -1.79 |
Structure conservation index | 0.62 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.695009 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3070918 120 - 22407834 CGCGUCCGCCGAACUCAACCGCUUGACCAGCGAGGCAGACAGCUUGCGCUGUGUGCUUGAGCUCAAGCAGGCGGAGAUUUCCGCCCUUAGCAAGGCCAAGGCGGAUCUGAUUCAUGAAAG ((.((((((((((.((..(((((((...(((.(((((.(((((....))))).)))))..)))....))))))).)).))).(((........)))...))))))).))........... ( -49.80) >DroSim_CAF1 1163 120 - 1 CGCGUCCGCCGAACUCAACCGCUUGACCAGCGAGGCCGACAGCUUGCGCUGUGUGCUUGAGCUCAAGCAGGCGGAGAUUUCCGCCCUCAGCAAGGCCAAGGCGGAUUUGAUUCAUGAAAG ((.(((((((.........((((.....)))).((((.(((((....))))).((((((....))))))(((((......)))))........))))..))))))).))........... ( -50.80) >DroEre_CAF1 1137 120 - 1 CGCGUCCGCCGAACUCAACCGCUUGACCAGCGAGGCCGACAGCCUGCGCUGCGUGCUGGAGCUGAAGCAGGCGGAGAUCUCCGCCCUCAGCAAGGCCAAGGCGGAUCUGAUUCAUGAAAG ((.(((((((.........((((.....)))).((((..((((.(((...))).))))..(((((....((((((....)))))).)))))..))))..))))))).))........... ( -53.00) >DroWil_CAF1 1359 117 - 1 CA---AUGCCGAACUGAGGCGUCUAACCAGCGAGGCUGAUAGCCUGCGUUGUGUAUUGGAGCUGAAGCAGGCAGAGAUAUCCACACUAACCAAAGCCAAUGAGGAUCUCAGGCGGGAGAA ..---.((((...((..(((.(((((((((((((((.....)))).))))).))..)))))))..))..))))................((...(((..((((...))))))).)).... ( -36.60) >DroYak_CAF1 1162 120 - 1 CGCAUCCGCCGAACUCAAUCGCCUGACCAGCGAGGCCGACAGCCUGCGCUGCGUGCUUGAGCUCAAGCAGGCGGAGAUCUCUGCCCUCAGCAAGGCCAAGGCGGAUCUGAUUCAUGAGAG ((.(((((((((.(((...(((((.(((((((((((.....)))).))))).))(((((....))))))))))))).))...(((........)))...))))))).))........... ( -49.90) >DroAna_CAF1 3383 120 - 1 CUCCAGUGCCGAGCUGAUACGUUUGAACAGCGAGGCAGACAGCCUACGGUGCGUAUUGGAGCUUAAGCAGGCAGAGAUCUCCAACCUUUCAAAGGCCAAUGCGGACCUGGUCCGGGAGAA ((((..((((..((((...........))))..))))....(((...(((.((((((((.((....)).((.((....))))..(((.....))))))))))).))).)))...)))).. ( -42.70) >consensus CGCGUCCGCCGAACUCAACCGCUUGACCAGCGAGGCCGACAGCCUGCGCUGCGUGCUGGAGCUCAAGCAGGCGGAGAUCUCCGCCCUCAGCAAGGCCAAGGCGGAUCUGAUUCAUGAAAG ....((((((..........((.....(((((((((.....)))).)))))...))....((....)).))))))....((((((..............))))))............... (-29.31 = -29.01 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:28 2006