Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 372,747 – 372,867 |
Length | 120 |
Max. P | 0.964424 |
Location | 372,747 – 372,867 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.83 |
Mean single sequence MFE | -31.88 |
Consensus MFE | -27.88 |
Energy contribution | -27.68 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.08 |
Mean z-score | -1.70 |
Structure conservation index | 0.87 |
SVM decision value | 1.57 |
SVM RNA-class probability | 0.964424 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 372747 120 + 22407834 UCGGGCUGUUGAUGAACUCAUUUGUCAAUGUCGCCUUCCCGACUUUCGGACCUGGCAUCCUCUUGAAGAUCUGCCUCCGAGGUAACCCCAGCCCAUCUAUUUAAUUACCAAUAUAUGUUG ..((((((((((..((....))..)))).((..((((.(((.....)))....((((...((.....))..))))...))))..))..)))))).......................... ( -31.00) >DroSec_CAF1 40408 119 + 1 UCGGGCUGUUGAUGAACUCAUUUGUCAAUGUCGCCUUCCCGACUUUCGGACCUGGCAUCCUCUUGAAGAUCUGCCUCCGAGGUAACCCCAGCCCAUCUAUUUAA-UACCAAUAUAUGUUG ..((((((((((..((....))..)))).((..((((.(((.....)))....((((...((.....))..))))...))))..))..))))))..........-............... ( -31.00) >DroSim_CAF1 41078 120 + 1 UCGGGCUGUUGAUGAACUCAUUUGUCAAUGUCGCCUUCCCGACUUUCGGACCUGGCAUCCUCUUGAAGAUCUGCCUCCGAGGUAACCCCAGCCCAUCUAUUUAAUUACCAAUAUAUGUUG ..((((((((((..((....))..)))).((..((((.(((.....)))....((((...((.....))..))))...))))..))..)))))).......................... ( -31.00) >DroEre_CAF1 46972 120 + 1 UCGGGCUGUUGAUGAACUCAUUUGUCAAUGUCGCCUUGCCGACUUUCGGACUCGGCGUCCUCUCGAAGAUCUCCCUCCGAGGCAAGCUCAGCCCAUCCAUUUAAUUACCAAUAUAUGUUG ..((((((((((..((....))..))))....((.(((((.......((((.....))))..(((.((......)).)))))))))).)))))).......................... ( -33.60) >DroYak_CAF1 41643 120 + 1 UCGGGCUGUUGAUGAACUCAUUUGUCAACGUCGCCUUGCCGACUUUCGGACGCGGCCUCCUCCCGAAGAUCUCCCUCUGAGGUAACCUCAGCCCAUCCAUUUAAUUACCAAUAUAUGUUG (((((..(((((..((....))..)))))(((((....(((.....)))..))))).....)))))..........((((((...))))))............................. ( -32.80) >consensus UCGGGCUGUUGAUGAACUCAUUUGUCAAUGUCGCCUUCCCGACUUUCGGACCUGGCAUCCUCUUGAAGAUCUGCCUCCGAGGUAACCCCAGCCCAUCUAUUUAAUUACCAAUAUAUGUUG ..((((((((((..((....))..))))....(((...(((.....)))....)))....(((((.((......)).)))))......)))))).......................... (-27.88 = -27.68 + -0.20)
Location | 372,747 – 372,867 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.83 |
Mean single sequence MFE | -35.52 |
Consensus MFE | -32.14 |
Energy contribution | -32.66 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.07 |
Mean z-score | -1.31 |
Structure conservation index | 0.90 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.820612 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 372747 120 - 22407834 CAACAUAUAUUGGUAAUUAAAUAGAUGGGCUGGGGUUACCUCGGAGGCAGAUCUUCAAGAGGAUGCCAGGUCCGAAAGUCGGGAAGGCGACAUUGACAAAUGAGUUCAUCAACAGCCCGA .........................(((((((..((((((((.((((.....))))..)))).((((...((((.....))))..))))....))))...(((.....))).))))))). ( -34.00) >DroSec_CAF1 40408 119 - 1 CAACAUAUAUUGGUA-UUAAAUAGAUGGGCUGGGGUUACCUCGGAGGCAGAUCUUCAAGAGGAUGCCAGGUCCGAAAGUCGGGAAGGCGACAUUGACAAAUGAGUUCAUCAACAGCCCGA ...............-.........(((((((..((((((((.((((.....))))..)))).((((...((((.....))))..))))....))))...(((.....))).))))))). ( -34.00) >DroSim_CAF1 41078 120 - 1 CAACAUAUAUUGGUAAUUAAAUAGAUGGGCUGGGGUUACCUCGGAGGCAGAUCUUCAAGAGGAUGCCAGGUCCGAAAGUCGGGAAGGCGACAUUGACAAAUGAGUUCAUCAACAGCCCGA .........................(((((((..((((((((.((((.....))))..)))).((((...((((.....))))..))))....))))...(((.....))).))))))). ( -34.00) >DroEre_CAF1 46972 120 - 1 CAACAUAUAUUGGUAAUUAAAUGGAUGGGCUGAGCUUGCCUCGGAGGGAGAUCUUCGAGAGGACGCCGAGUCCGAAAGUCGGCAAGGCGACAUUGACAAAUGAGUUCAUCAACAGCCCGA ...(((.((........)).)))..(((((((.......((((((((....)))))))).(((((((..(.(((.....))))..)))..((((....)))).)))).....))))))). ( -39.20) >DroYak_CAF1 41643 120 - 1 CAACAUAUAUUGGUAAUUAAAUGGAUGGGCUGAGGUUACCUCAGAGGGAGAUCUUCGGGAGGAGGCCGCGUCCGAAAGUCGGCAAGGCGACGUUGACAAAUGAGUUCAUCAACAGCCCGA ...(((.((........)).)))..(((((((.(((..((((.((((.....))))..))))..)))..(((.....((((......))))...)))...(((.....))).))))))). ( -36.40) >consensus CAACAUAUAUUGGUAAUUAAAUAGAUGGGCUGGGGUUACCUCGGAGGCAGAUCUUCAAGAGGAUGCCAGGUCCGAAAGUCGGGAAGGCGACAUUGACAAAUGAGUUCAUCAACAGCCCGA .........................(((((((..((((((((.((((.....))))..)))).((((...((((.....))))..))))....))))...(((.....))).))))))). (-32.14 = -32.66 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:11 2006