Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,067,766 – 3,067,868 |
Length | 102 |
Max. P | 0.976606 |
Location | 3,067,766 – 3,067,868 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 78.35 |
Mean single sequence MFE | -37.50 |
Consensus MFE | -29.69 |
Energy contribution | -28.97 |
Covariance contribution | -0.72 |
Combinations/Pair | 1.12 |
Mean z-score | -2.81 |
Structure conservation index | 0.79 |
SVM decision value | 1.77 |
SVM RNA-class probability | 0.976606 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3067766 102 + 22407834 UAACUGCUGUCUUGCAGGG-CUGUAGGCU-UCGGUCCAAAAUUA-AGUCUACAGUCUCUGCGAUUCCGGGCAGUUGAAA-UGAUGCAAGAUGAGAG---GC-UCAGUCCA (((((((((..((((((((-(((((((((-(.(((.....))))-))))))))))).))))))..)..))))))))...-(((.((..........---))-)))..... ( -36.00) >DroPse_CAF1 25089 99 + 1 UAACUGCCGUCUUGCAGCGCCUGUGGACGAUAGGUCCAAAAUUUCAGUCUACAGACGCUGCGAUUCCGGGCAGUUGAGU-GGAUG-------GGAU---CCACCUUUAAA (((((((((..((((((((.((((((((((.............)).)))))))).))))))))..)..)))))))).((-((((.-------..))---))))....... ( -42.72) >DroEre_CAF1 21064 102 + 1 UAACUGCUGUCUUGCAGGG-CUGUAGGCU-UCGGUCCAAAAUUU-AGUCUACAGUCGCUGCGAUUCCGGGCAGUUGAAA-GGAUGCAAGAUGAGAG---GC-CCAGUCCA (((((((((..((((((((-(((((((((-..............-))))))))))).))))))..)..))))))))...-((((......(....)---..-...)))). ( -38.04) >DroYak_CAF1 21166 105 + 1 UAACUGCUGUCUUGCAGGG-CUGUAGGCU-UUGGUCCAAAAUUU-AGUCUACAGUCGCUGCGAUUCCGGGCAGUUGAAA-UGAUGCAAGAUGAAAGAGAGC-CCGGUCCA ...........((((((((-(((((((((-..(........)..-))))))))))).))))))..((((((..((...(-(........))....))..))-)))).... ( -34.80) >DroAna_CAF1 20498 95 + 1 UAACUGCUGUCUUGCAGAGUCUGUGGACG-U-GGUCCAAAUUU---GUCUACAGCCACUGCGAUUCCGGGCAGUUGAAAGUGAU--AAUACGGACU---CC-C----CAA (((((((((..((((((.(.(((((((((-.-..........)---)))))))).).))))))..)..))))))))........--.....((...---..-)----).. ( -30.70) >DroPer_CAF1 25172 99 + 1 UAACUGCCGUCUUGCAGCGCCUGUGGACGAUAGGUCCAAAAUUUCAGUCUACAGACGCUGCGAUUCCGGGCAGUUGAGU-GGAUG-------GGAU---CCACCUUUAAA (((((((((..((((((((.((((((((((.............)).)))))))).))))))))..)..)))))))).((-((((.-------..))---))))....... ( -42.72) >consensus UAACUGCUGUCUUGCAGGG_CUGUAGACG_UAGGUCCAAAAUUU_AGUCUACAGUCGCUGCGAUUCCGGGCAGUUGAAA_GGAUG_AAGAUGAGAG___CC_CCAGUCAA (((((((((..((((((.(.((((((((..................)))))))).).))))))..)..)))))))).................................. (-29.69 = -28.97 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:24 2006