Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,046,598 – 3,046,694 |
Length | 96 |
Max. P | 0.598241 |
Location | 3,046,598 – 3,046,694 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 89.80 |
Mean single sequence MFE | -32.33 |
Consensus MFE | -25.99 |
Energy contribution | -26.77 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.04 |
Mean z-score | -2.06 |
Structure conservation index | 0.80 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.598241 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3046598 96 - 22407834 UGAAGGAAAACGAGGGCGCUCUGAAAGAUGAUCGCGAAAGCGAACCAAGAGGGGUGGAUGUUUGCUAUGAGUCAGCCACUUG--CGCCGCUCGAACGG ..........(((((((((............((((....))))........((((((.(((((.....))).)).)))))))--)))).))))..... ( -33.00) >DroSec_CAF1 6235 98 - 1 UGAAGGAAAACGAGGGCGCUCGAAAUUAUUAUCGCGAAAGCGGACUAAGAGGGGUGGAUGUGUGCUAUGAGUCAGCCAGUUGAGCGCCUCUAGAGCGG ................(((((..........((((....))))....(((((.((.(((.((.(((.......))))))))..)).))))).))))). ( -29.90) >DroSim_CAF1 6470 98 - 1 UGAAGGAAAACGAGGGCGCUCGAAAAUAUGAUCGCGAAAGCGAACUAAGAGGGGUGGAUGUGUGCUAUGAGUCACCCACUUGAGCGCCUCUAGAGCGG ...........((((.(((((..........((((....)))).....(((((((((..(((...)))...)))))).))))))))))))........ ( -34.10) >consensus UGAAGGAAAACGAGGGCGCUCGAAAAUAUGAUCGCGAAAGCGAACUAAGAGGGGUGGAUGUGUGCUAUGAGUCAGCCACUUGAGCGCCUCUAGAGCGG ..........(.(((((((((..........((((....))))........((((((.((...((.....)))).))))))))))))).)).)..... (-25.99 = -26.77 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:18 2006