Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,044,185 – 3,044,282 |
Length | 97 |
Max. P | 0.680274 |
Location | 3,044,185 – 3,044,282 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 89.61 |
Mean single sequence MFE | -21.98 |
Consensus MFE | -17.59 |
Energy contribution | -17.10 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.14 |
Mean z-score | -1.62 |
Structure conservation index | 0.80 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.680274 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3044185 97 + 22407834 AAAUGGCGUGUUCUAAAAUGCGAACUAGAUUUA-UUUUCCGAGAAAAGCGAAUUGUUAAAACCAAGACGUAUUUGACACAGCCAGGAUAACACGCCAU ..((((((((((.......((......(((((.-(((((...)))))..)))))((((((((......)).))))))...))......)))))))))) ( -21.42) >DroSec_CAF1 3913 98 + 1 AAGUGGCGUGUUCUAAAAUGCGAGCUAGAUUUUUUUUCCCGAGAAAAGCAAAUUGUUAAAACCAAGACGUAAUUCCCCCAGCCAGGAUAACACGCCAU ..((((((((((.....((.(..(((.(((((((((((....)))))).)))))(((........)))...........)))..).)))))))))))) ( -21.50) >DroSim_CAF1 3920 97 + 1 AAGUGGCGUGUUCUAAAAUGCGAGCUAUAUUUU-UUUCCCGAGAAAAGCGAAUUGUUAAAACCAAGACGUAAUUCCCCCAGCCAGGAUAACACGCCAU ..((((((((((.....((.(..(((......(-((((....)))))(((..(((.......)))..))).........)))..).)))))))))))) ( -21.70) >DroYak_CAF1 4013 96 + 1 AAGUGGCGUGUUCUGAAAUGCGAACUAU--UUUUUUUCACAAGAAAAGCGAAUUAUUAAAACUAAGACGUAUUUUACCCAGCCAGGAUAACACGCCAU ..((((((((((.(((((((((......--..((((((....)))))).......(((....)))..))))))))).((.....))..)))))))))) ( -23.30) >consensus AAGUGGCGUGUUCUAAAAUGCGAACUAGAUUUU_UUUCCCGAGAAAAGCGAAUUGUUAAAACCAAGACGUAAUUCACCCAGCCAGGAUAACACGCCAU ..((((((((((.......((.............((((....)))).(((..(((.......)))..)))..........))......)))))))))) (-17.59 = -17.10 + -0.50)
Location | 3,044,185 – 3,044,282 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 89.61 |
Mean single sequence MFE | -23.80 |
Consensus MFE | -19.33 |
Energy contribution | -19.27 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.23 |
Mean z-score | -1.38 |
Structure conservation index | 0.81 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.514701 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3044185 97 - 22407834 AUGGCGUGUUAUCCUGGCUGUGUCAAAUACGUCUUGGUUUUAACAAUUCGCUUUUCUCGGAAAA-UAAAUCUAGUUCGCAUUUUAGAACACGCCAUUU (((((((((..(((((((...))))....((..(((.......)))..))........)))...-....(((((........)))))))))))))).. ( -22.20) >DroSec_CAF1 3913 98 - 1 AUGGCGUGUUAUCCUGGCUGGGGGAAUUACGUCUUGGUUUUAACAAUUUGCUUUUCUCGGGAAAAAAAAUCUAGCUCGCAUUUUAGAACACGCCACUU .((((((((..((((((..(((.(((((................))))).)))...)))))).......(((((........)))))))))))))... ( -24.29) >DroSim_CAF1 3920 97 - 1 AUGGCGUGUUAUCCUGGCUGGGGGAAUUACGUCUUGGUUUUAACAAUUCGCUUUUCUCGGGAAA-AAAAUAUAGCUCGCAUUUUAGAACACGCCACUU .(((((((((......((..((((((...((..(((.......)))..))..))))))(((...-.........))))).......)))))))))... ( -25.42) >DroYak_CAF1 4013 96 - 1 AUGGCGUGUUAUCCUGGCUGGGUAAAAUACGUCUUAGUUUUAAUAAUUCGCUUUUCUUGUGAAAAAAA--AUAGUUCGCAUUUCAGAACACGCCACUU .(((((((((...(((((((((..........))))))........(((((.......))))).....--.............))))))))))))... ( -23.30) >consensus AUGGCGUGUUAUCCUGGCUGGGGGAAAUACGUCUUGGUUUUAACAAUUCGCUUUUCUCGGGAAA_AAAAUAUAGCUCGCAUUUUAGAACACGCCACUU .(((((((((......((.(((((((...((..(((.......)))..)).)))))))(((.............))))).......)))))))))... (-19.33 = -19.27 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:15 2006