Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,043,387 – 3,043,502 |
Length | 115 |
Max. P | 0.677709 |
Location | 3,043,387 – 3,043,502 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 78.40 |
Mean single sequence MFE | -46.68 |
Consensus MFE | -24.10 |
Energy contribution | -22.38 |
Covariance contribution | -1.72 |
Combinations/Pair | 1.36 |
Mean z-score | -1.93 |
Structure conservation index | 0.52 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.677709 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3043387 115 + 22407834 UCCCUCUCCGCUUGGGACGCCAGCUGACCAAGCAGCGGAUGGCGACGACCACGGCAACCAAGUUG---GCGGCCAAGAAGCGGUCAGGCGGACGCCUAAAAAAGCCCAAGAAGACUCC ....(((...((((((.(((((((((......))))...)))))..((((.((.((((...))))---.))((......))))))((((....)))).......)))))).))).... ( -42.40) >DroSec_CAF1 3115 115 + 1 UCCCUGUCCGCUUGGGACGCCAGCUGGUCAAGCAGCGAAUGGCGAUGACCUUGGCAACCAAGCUG---GCAGCCAAGAAGCGGUCAGGAGGACGCCUAAAAAGGGCCAAGAAGACUGC ..((((.((((((.((..((((((((((((.((........))..))))).(((...))))))))---))..))...)))))).)))).....((((.....))))............ ( -48.10) >DroSim_CAF1 3124 115 + 1 UCCCUGUCCGCUUGGGACGCCAGCUGGUCAAGCAGCGGAUGGCGAUGAUCUCGGCAACCAAGCUG---GCGGCCAAGAAGCGGUCAGGAGGACGCCUAAAAAGGGCCAAGAAGACUGC ..((((.((((((.((.((((((((.((......))((.((.(((.....))).)).)).)))))---))).))...)))))).)))).....((((.....))))............ ( -48.70) >DroEre_CAF1 3186 109 + 1 UCUCGCCUCGCUUGGGGCGGCGGGCGAUCAAGCAGCGGAUGCCGACGACCACGGCGGCCAAGCUGGUGGCGAGCAAGAAGCGAUCGGGACG---------AAAGUCCAAGAAGACUGA ..(((((((....)))))))(((.(((((...((((((.(((((.......))))).))..))))((..(......)..)))))))((((.---------...)))).......))). ( -43.70) >DroYak_CAF1 3200 106 + 1 UCUCGCCUCGCUUGGGCCGCCGGGCGAUCAAGCAGCGUAUGCCGACGAGCACGGCGGCCAAGCUG---GCGGGCAAGAAGCGAUCGGGACG---------AAAGUCCAAGAAGACGGC .((((((..((((((.((((((.((......(((.....)))......)).)))))))))))).)---))))).......((.((.((((.---------...)))).....)))).. ( -50.50) >consensus UCCCUCUCCGCUUGGGACGCCAGCUGAUCAAGCAGCGGAUGGCGACGACCACGGCAACCAAGCUG___GCGGCCAAGAAGCGGUCAGGAGGACGCCUAAAAAAGGCCAAGAAGACUGC ..(((..((((((((..((.....)).)))))).((...((((..((....((((......))))....))))))....))))..))).............................. (-24.10 = -22.38 + -1.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:13 2006