Locus 1120

Sequence ID 2L_DroMel_CAF1
Location 3,024,037 – 3,024,131
Length 94
Max. P 0.613002
window1824

overview

Window 4

Location 3,024,037 – 3,024,131
Length 94
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 78.40
Mean single sequence MFE -21.22
Consensus MFE -13.61
Energy contribution -13.53
Covariance contribution -0.08
Combinations/Pair 1.15
Mean z-score -1.36
Structure conservation index 0.64
SVM decision value 0.16
SVM RNA-class probability 0.613002
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3024037 94 + 22407834
CAGGCCAUGGCCGCCACGUUAGCGGCUAUAGAGGUGCCACAACAAAAUGGUAAAUAUUAUAAACU-CUG----AAAAUAUACAGCCCAAGUCACACGAC
..(((..(((((((.......)))))))(((((.(((((........)))))...........))-)))----..........)))...(((....))) ( -23.30)
>DroGri_CAF1 5636 93 + 1
CAGGCAAUGGCUGCAACGCUGGCUGCCAUCGAGGUUCCGCAACAAAAUUGUGAGUAGCCAAAGCG-UUGCUUGAACUGAUGCUUUUC-----AUGCUUA
.(((((......((((((((((((((((.(((.(((....)))....))))).))))))..))))-))))......(((......))-----)))))). ( -30.30)
>DroSec_CAF1 669 94 + 1
CAAGCCAUGGCCGCCACGUUAGCUGCUAUAGAGGUGCCACAACAAAAUGGUAAAUAAAAUAAGCU-CUA----AAAAUAUACCGCCCAAGUCACAUGUC
.....((((((.((.......)).))..(((((.(((((........)))))...........))-)))----....................)))).. ( -12.70)
>DroSim_CAF1 830 94 + 1
CAAGCCAUGGCCGCCACGUUAGCGGCUAUAGAGGUGCCACAACAAAAUGGUAAAUAAAAUAAGCU-CUA----AAAAUAUACCGUCCAAGUCACAUGUC
.....(((((((((.......)))))..(((((.(((((........)))))...........))-)))----....................)))).. ( -18.80)
>DroEre_CAF1 912 95 + 1
CAGGCCAUGGCCGCCACAUUAGCGGCUAUAGAGGUGCCACAACAAAAUGGUAAAUAAUAUAAGUUUUUG----AAAAUAUACUGCAUAAAUCACACGUA
((((((((((((((.......))))))))...)))((((........))))..................----........)))............... ( -19.10)
>DroYak_CAF1 830 94 + 1
CAGGCCAUGGCCGCCACGUUAGCGGCUAUAGAGGUGCCACAACAAAAUGGUAAAUAAUAUAAGCU-UUG----AAAAUAAACAGCAUAAGUAACACCUC
......((((((((.......)))))))).(((((((((........)))............(((-.(.----.......).)))........)))))) ( -23.10)
>consensus
CAGGCCAUGGCCGCCACGUUAGCGGCUAUAGAGGUGCCACAACAAAAUGGUAAAUAAUAUAAGCU_CUG____AAAAUAUACAGCCCAAGUCACACGUC
...(((((((((((.......))))))))....((......)).....)))................................................ (-13.61 = -13.53 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:12 2006