| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,023,087 – 3,023,178 |
| Length | 91 |
| Max. P | 0.716110 |
| Location | 3,023,087 – 3,023,178 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 89.19 |
| Mean single sequence MFE | -18.23 |
| Consensus MFE | -14.25 |
| Energy contribution | -14.25 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.716110 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3023087 91 + 22407834 ACUCUAACAAUUGAAAGGCACACAGCGAAGAACCACAACAAAAAGCGCUGUUAUCGUUCCGCGGAAGCUAAUCGAUAACAGAAAAUCUACC .................((.....)).....................(((((((((....((....))....))))))))).......... ( -18.20) >DroSec_CAF1 4286 91 + 1 ACUGAAACAAUUGAAAGGCACAAAGCGGAGAACCACAACAAAAAGCGCUGUUAUCGUUCCGCGGAAGCUAAUCGAUAACAGAAACUCGACC ..........((((...((.....))((....)).............(((((((((....((....))....)))))))))....)))).. ( -19.80) >DroSim_CAF1 6855 91 + 1 ACUCCCACAAUUGAAAGGCACAAAGCGGAGAACCACAACAAAAAGCGCUGUUAUCGUUCCGCGGAAGCUAAUCGAUAACAGAAACUCGACC .((((((....))....((.....)))))).................(((((((((....((....))....))))))))).......... ( -22.20) >DroYak_CAF1 15640 91 + 1 GCGUCAAUAGUUGAAAGGCACAAACCGCAGAACCACAACAAAAAGCACUGUUAUCGUUCCGUUGAAGUUAAUCGAUAACAAAAACUCAACC (((......(((....)))......))).((((...((((........))))...)))).(((((.(((.............)))))))). ( -12.72) >consensus ACUCCAACAAUUGAAAGGCACAAAGCGGAGAACCACAACAAAAAGCGCUGUUAUCGUUCCGCGGAAGCUAAUCGAUAACAGAAACUCGACC ..........((((..((..(........)..)).............(((((((((....((....))....)))))))))....)))).. (-14.25 = -14.25 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:11 2006