Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,020,466 – 3,020,572 |
Length | 106 |
Max. P | 0.806233 |
Location | 3,020,466 – 3,020,572 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 83.77 |
Mean single sequence MFE | -25.20 |
Consensus MFE | -15.69 |
Energy contribution | -15.20 |
Covariance contribution | -0.49 |
Combinations/Pair | 1.43 |
Mean z-score | -2.85 |
Structure conservation index | 0.62 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.650297 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3020466 106 + 22407834 CAACAGCAACAACAUUAGGCAAUGCUGCAGUGACCACUACAGCACCUACUUCUAGCACCCUCAUGCAGAUGCUAGCCAACAUGGCAAACUCCACAACCACAACGCU ....((((.......((((...(((((.(((....))).)))))))))..(((.(((......)))))))))).(((.....)))..................... ( -23.90) >DroSec_CAF1 1686 106 + 1 CAACAGCAGCUACAUUAGGAAAUGCUGCAGUGACCACAACAGCACCCACUUCUAGCACCCUCAUGCAGAUGCUAGCCAAUAUGGCAAACUCUACAACCACAACGCU ....((((.((.(((.(((...(((((.((((..............))))..))))).))).))).)).)))).(((.....)))..................... ( -22.54) >DroSim_CAF1 4254 106 + 1 CAACAGCAGCUACAUUAGGGAAUGCUGCAGUGACCACAACAGCACCCACUUCUAGCACCCUCAUGCAGAUGCUAGCCAACAUGGCAAACUCCACAACCACAACGCU ....((((.((.(((.((((..(((((.((((..............))))..))))))))).))).)).)))).(((.....)))..................... ( -25.94) >DroEre_CAF1 7308 106 + 1 GAACAGCAUCAACAUUAGGCAAUGCUGCAGUGACCACUACAGCACCCACUUCUAGCACCCUCAUGCAGAUGAUAGCUAACAUGGCAAAUUCCACAUCUACAUCGCU ....(((((((......((...(((((.(((....))).))))).))...(((.(((......)))))))))).(((.....)))..................))) ( -20.70) >DroYak_CAF1 13004 106 + 1 CAACCGCAGCAACAUCAGGCAAUGCUGCAGUGACCACUGCAGCACCCACUUCUAGCACCCUCAUGCAGAUGCUAGCCAACAUGGCAAACUCCACAACCGCCACCCU .....((((((......((...(((((((((....))))))))).))...(((.(((......)))))))))).(((.....))).............))...... ( -31.00) >DroAna_CAF1 23589 103 + 1 UA---GGAGCAACAGCAGGUAAUGUAGCCACGACUACGCCUGUCCCUACCUCCAGCACCCUAAUGCAAAUGCUGGCCAGUAUGGCCAACUCCACUACCACGACCUU ..---((((((...((((((...((((......))))))))))...........(((......)))...)))(((((.....)))))..))).............. ( -27.10) >consensus CAACAGCAGCAACAUUAGGCAAUGCUGCAGUGACCACUACAGCACCCACUUCUAGCACCCUCAUGCAGAUGCUAGCCAACAUGGCAAACUCCACAACCACAACGCU .....(((((.......((...(((((.(((....))).))))).)).......(((......)))....))).(((.....)))..................)). (-15.69 = -15.20 + -0.49)
Location | 3,020,466 – 3,020,572 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 83.77 |
Mean single sequence MFE | -38.92 |
Consensus MFE | -28.80 |
Energy contribution | -28.62 |
Covariance contribution | -0.18 |
Combinations/Pair | 1.38 |
Mean z-score | -2.63 |
Structure conservation index | 0.74 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.806233 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3020466 106 - 22407834 AGCGUUGUGGUUGUGGAGUUUGCCAUGUUGGCUAGCAUCUGCAUGAGGGUGCUAGAAGUAGGUGCUGUAGUGGUCACUGCAGCAUUGCCUAAUGUUGUUGCUGUUG (((((((.(((.((((......)))).....(((((((((......))))))))).....(((((((((((....))))))))))))))))))))).......... ( -38.20) >DroSec_CAF1 1686 106 - 1 AGCGUUGUGGUUGUAGAGUUUGCCAUAUUGGCUAGCAUCUGCAUGAGGGUGCUAGAAGUGGGUGCUGUUGUGGUCACUGCAGCAUUUCCUAAUGUAGCUGCUGUUG (((..((((((..........))))))...)))((((.((((((.((((((((...(((((.(((....))).)))))..)))))..))).)))))).)))).... ( -37.40) >DroSim_CAF1 4254 106 - 1 AGCGUUGUGGUUGUGGAGUUUGCCAUGUUGGCUAGCAUCUGCAUGAGGGUGCUAGAAGUGGGUGCUGUUGUGGUCACUGCAGCAUUCCCUAAUGUAGCUGCUGUUG (((..((((((..........))))))...)))((((.((((((.((((((((...(((((.(((....))).)))))..))))..)))).)))))).)))).... ( -38.00) >DroEre_CAF1 7308 106 - 1 AGCGAUGUAGAUGUGGAAUUUGCCAUGUUAGCUAUCAUCUGCAUGAGGGUGCUAGAAGUGGGUGCUGUAGUGGUCACUGCAGCAUUGCCUAAUGUUGAUGCUGUUC ((((((((.(((((((......))))))).)).)))(((.((((..((((((.....)).(((((((((((....))))))))))))))).)))).)))))).... ( -36.90) >DroYak_CAF1 13004 106 - 1 AGGGUGGCGGUUGUGGAGUUUGCCAUGUUGGCUAGCAUCUGCAUGAGGGUGCUAGAAGUGGGUGCUGCAGUGGUCACUGCAGCAUUGCCUGAUGUUGCUGCGGUUG ...(..((..(...((......((((.....(((((((((......)))))))))..))))((((((((((....))))))))))..))....)..))..)..... ( -43.10) >DroAna_CAF1 23589 103 - 1 AAGGUCGUGGUAGUGGAGUUGGCCAUACUGGCCAGCAUUUGCAUUAGGGUGCUGGAGGUAGGGACAGGCGUAGUCGUGGCUACAUUACCUGCUGUUGCUCC---UA .(((..((..(((..(.(((..((.((((..(((((((((......))))))))).)))).))...)))(((((....))))).....)..)))..)).))---). ( -39.90) >consensus AGCGUUGUGGUUGUGGAGUUUGCCAUGUUGGCUAGCAUCUGCAUGAGGGUGCUAGAAGUGGGUGCUGUAGUGGUCACUGCAGCAUUGCCUAAUGUUGCUGCUGUUG ......(((((.((((......))))((((((((((((((......))))))))).....(((((((((((....)))))))))))..)))))...)))))..... (-28.80 = -28.62 + -0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:10 2006