Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,012,697 – 3,012,857 |
Length | 160 |
Max. P | 0.593947 |
Location | 3,012,697 – 3,012,817 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -35.67 |
Consensus MFE | -32.55 |
Energy contribution | -32.67 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -1.78 |
Structure conservation index | 0.91 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.593947 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3012697 120 - 22407834 UAAUCACCAGAUGUGCGUCAACUAAACGGAGGCUUCCGCUUCUGGUUUGGAAACCGAAAGCCAGCCCGAUGCACUGAAUCAACACAUAUCACCGCAUUUGUAUCUGGAAAGUGAAAUUGU ......(((((((((((((..((((((((((((....)))))).))))))....(....).......)))))))...................((....))))))))............. ( -32.10) >DroSec_CAF1 20060 120 - 1 UAAUCACCAGAUGUGCGUCGACUAAACGGAGGCUUCCGCUUCUGGUUUGGAAACCGAAAGCCAGACCGAUGCACUGAAUCACCGCAUAUCACCGCAUUUGUAUCUGGAAAGUGAAAUUGU ......((((((((((((((......(((((((....)))))))((((((....(....))))))))))))))).........((........))......))))))............. ( -38.90) >DroEre_CAF1 20768 120 - 1 UAAUCACCAGAUGUGCGUCGACUAAACGGAGGCUUCCGCUUCUGGUUUGGAAACCGAAAGCCAGCCCGAUGCACUGAAUCACCGCAUAUCACCGCAUUUGUAUCUGGAAAGUGAAAUUGU ......((((((((((((((.((((((((((((....)))))).))))))....(....)......)))))))).........((........))......))))))............. ( -36.00) >consensus UAAUCACCAGAUGUGCGUCGACUAAACGGAGGCUUCCGCUUCUGGUUUGGAAACCGAAAGCCAGCCCGAUGCACUGAAUCACCGCAUAUCACCGCAUUUGUAUCUGGAAAGUGAAAUUGU ......((((((((((((((.((((((((((((....)))))).))))))....(....)......)))))))).........(((............)))))))))............. (-32.55 = -32.67 + 0.11)
Location | 3,012,737 – 3,012,857 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.89 |
Mean single sequence MFE | -45.77 |
Consensus MFE | -43.69 |
Energy contribution | -43.80 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -1.47 |
Structure conservation index | 0.95 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.507089 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3012737 120 - 22407834 GCUUUCUGGCUGGGAUCGGAUGGGCUGGCGCUGAAGCGUCUAAUCACCAGAUGUGCGUCAACUAAACGGAGGCUUCCGCUUCUGGUUUGGAAACCGAAAGCCAGCCCGAUGCACUGAAUC ((..((.((((((..((((......((((((....((((((.......)))))))))))).((((((((((((....)))))).))))))...))))...)))))).)).))........ ( -46.50) >DroSec_CAF1 20100 120 - 1 GCUUUCUGGCUGGGAUCGGAUGGGCUGGCGCUGAAGCGUCUAAUCACCAGAUGUGCGUCGACUAAACGGAGGCUUCCGCUUCUGGUUUGGAAACCGAAAGCCAGACCGAUGCACUGAAUC ....((((((((....))).(((...(((((....)))))...)))))))).((((((((......(((((((....)))))))((((((....(....)))))))))))))))...... ( -45.00) >DroEre_CAF1 20808 120 - 1 GCUUUCUGGCUGGGAUCGGAUGGGCUGGCGCUGAAGCGUCUAAUCACCAGAUGUGCGUCGACUAAACGGAGGCUUCCGCUUCUGGUUUGGAAACCGAAAGCCAGCCCGAUGCACUGAAUC ((..((.((((((..((((......((((((....((((((.......)))))))))))).((((((((((((....)))))).))))))...))))...)))))).)).))........ ( -45.80) >consensus GCUUUCUGGCUGGGAUCGGAUGGGCUGGCGCUGAAGCGUCUAAUCACCAGAUGUGCGUCGACUAAACGGAGGCUUCCGCUUCUGGUUUGGAAACCGAAAGCCAGCCCGAUGCACUGAAUC ((..((.((((((..((((......((((((....((((((.......)))))))))))).((((((((((((....)))))).))))))...))))...)))))).)).))........ (-43.69 = -43.80 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:07 2006