| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,012,363 – 3,012,473 |
| Length | 110 |
| Max. P | 0.714296 |
| Location | 3,012,363 – 3,012,473 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.86 |
| Mean single sequence MFE | -26.67 |
| Consensus MFE | -12.31 |
| Energy contribution | -12.88 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.97 |
| Structure conservation index | 0.46 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.714296 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3012363 110 + 22407834 UCCAGAUGUUCGCCCCUCUGAAUUUAAAAAUAAAAUUGAUUACUUUCCGCUUAGUAGUUGGCUAUUAACUUGGCCAAUUUACAUCUUCAAGGGUAAAC-AUCUUCUGGCU---------A .(((((((((..(((...((((...............(((((((........)))))))(((((......)))))..........)))).)))..)))-)...)))))..---------. ( -28.80) >DroSec_CAF1 19753 108 + 1 UGCAGAUGUUCGCCUAUCUGAACUG--AAAUAAAAUUGAUUACUUUCCGUUUAGUAGUUGGCUAUUAACUCAGCCAAUUUACAUCUUCAAGAGGAAAC-AUCUUCUGGCU---------A .((((((((....(((.((((((.(--((((((......))).)))).)))))))))((((((........))))))...))))))...((((((...-.)))))).)).---------. ( -26.70) >DroEre_CAF1 20419 115 + 1 UGCAGAUGU---CCUCUCUGCAUUU--AAAUGAAAUUGAUUACUUUCCGCUCCGACGGUGGCUAUUAACUUAGCCAUAUUACAGCUUCAAUGGUAACCUAUAUACCACCUAUCUUACACA ((((((...---....))))))...--...((((.(((........(((......)))((((((......)))))).....))).)))).(((((.......)))))............. ( -24.50) >consensus UGCAGAUGUUCGCCUCUCUGAAUUU__AAAUAAAAUUGAUUACUUUCCGCUUAGUAGUUGGCUAUUAACUUAGCCAAUUUACAUCUUCAAGGGUAAAC_AUCUUCUGGCU_________A ..((((.(......).))))...................(((((((.........(((((((((......)))))))))..........)))))))........................ (-12.31 = -12.88 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:05 2006