Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,011,508 – 3,011,628 |
Length | 120 |
Max. P | 0.999902 |
Location | 3,011,508 – 3,011,628 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.07 |
Mean single sequence MFE | -23.41 |
Consensus MFE | -16.31 |
Energy contribution | -16.31 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.88 |
Structure conservation index | 0.70 |
SVM decision value | 4.46 |
SVM RNA-class probability | 0.999902 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3011508 120 - 22407834 GAACGGACUUGAAGGAACCAUCAAAAGAAUACUUAUACCCUUCGUAAAGGGUAAACAAUACAAUGCAGCAACUCUUCUCUCUCUCUCUAAAAAAAAAAAACAAAAAACCGAAGGGAAGAA ........((((.(....).))))...........(((((((....)))))))...................((((((((.((..........................)))))))))). ( -17.57) >DroSec_CAF1 18912 109 - 1 GUACGAACUUGAAGGAACCAUCGAAAGAAUACUUAUACCCUUCGUAAAGGGUAAACAAUACAAUGCAGCAACUCUUCUCUCU-----UAACAAAA------AAAAAACAGAAGGGAAGAA (((.....(((.........((....)).......(((((((....)))))))..))).....)))......((((((((((-----........------.......)).)))))))). ( -19.96) >DroEre_CAF1 19546 99 - 1 CUUC-UUCUUGCAGAAAGCAUCGCAAGAAUGCUAGUACCCUUCAGAAAGGGUAUACAAAACAAUGCAGUAACUCUUCUCUC--------------------AAAAAAGUGGAGGGAAGAA ....-...(((((...((((((....).))))).((((((((....)))))))).........)))))....(((((((((--------------------.........))))))))). ( -32.70) >consensus GUACGAACUUGAAGGAACCAUCGAAAGAAUACUUAUACCCUUCGUAAAGGGUAAACAAUACAAUGCAGCAACUCUUCUCUCU_____UAA_AAAA______AAAAAACAGAAGGGAAGAA ........(((.........((....)).......(((((((....)))))))..)))..............((((((((...............................)))))))). (-16.31 = -16.31 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:02 2006