Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,010,014 – 3,010,134 |
Length | 120 |
Max. P | 0.687971 |
Location | 3,010,014 – 3,010,134 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.72 |
Mean single sequence MFE | -36.37 |
Consensus MFE | -28.72 |
Energy contribution | -28.51 |
Covariance contribution | -0.21 |
Combinations/Pair | 1.12 |
Mean z-score | -2.29 |
Structure conservation index | 0.79 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.687971 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3010014 120 - 22407834 CCCACCACUUUGUGGGUGGCUUCCCCCGGCUGGGAGACUGGGAACCCGCAACCUCCAGCUCCCGACAAUGGACAAUAAAACCGGAGUGCCACACAAAAAGCAUAAUAAGUUUUUAAUGGG ((((((((...))))(((((((((....(.((((((.(((((...........))))))))))).)...((.........)))))).)))))...((((((.......))))))..)))) ( -38.70) >DroSec_CAF1 17460 112 - 1 CCCACCACUUUGUGGGUGGCUUCCCCCG--------ACUGGGAACCCGCAACCUCCAGCUCCCCACAAUGGACAAUAAAACCAGAGUGGCACACAAAAAGCAUAAUAAGCUUUUAAUGGG ((((((((((((((((.((.(((((...--------...))))).))((........))..)))))).(((.........)))))))))......((((((.......))))))..)))) ( -36.40) >DroEre_CAF1 18067 119 - 1 CCCACCACUUUGUGGGUGGCUUCUUC-AACUGGGAGACUGGGAACGCGCAACCUCCAGCUCUCGACAAUGGACAAUAAAACCAGAGUGGCACACAAAAAGCAUAAUAAGCUUUUAAUGGG ((((((((((((.(..(....(((..-...((((((.(((((...........))))))))))).....))).....)..)))))))))......((((((.......))))))..)))) ( -34.00) >consensus CCCACCACUUUGUGGGUGGCUUCCCCCG_CUGGGAGACUGGGAACCCGCAACCUCCAGCUCCCGACAAUGGACAAUAAAACCAGAGUGGCACACAAAAAGCAUAAUAAGCUUUUAAUGGG ((((((((((((.(.((((.(((((..............))))).))))....((((...........))))........)))))))))......((((((.......))))))..)))) (-28.72 = -28.51 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:56 2006