Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 372,194 – 372,352 |
Length | 158 |
Max. P | 0.998409 |
Location | 372,194 – 372,285 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 97.80 |
Mean single sequence MFE | -14.23 |
Consensus MFE | -13.04 |
Energy contribution | -13.04 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.69 |
Structure conservation index | 0.92 |
SVM decision value | 1.48 |
SVM RNA-class probability | 0.958058 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 372194 91 + 22407834 CAUCGUAGUUCCACUUUAUUUGCAUUUUUAAUUUGUUCCUAAUUAAAUAUUCAUCUCUCUGUGCAUCUCACGCUGUGUCAUUUUACGGCAC ....((((...(((......((.((.(((((((.......))))))).)).)).......)))...)).))((((((......)))))).. ( -13.52) >DroSec_CAF1 39854 91 + 1 CAUGGUAGUUCCACUUUAUUUGCAUUUUUAAUUUGUUCCUAAUUAAAUAUUCAUCUCUCUGUGCAUCUCACGCUGUGUGAUUUUACGGCAC ..(((.....))).......(((((.(((((((.......))))))).............)))))......((((((......)))))).. ( -13.74) >DroSim_CAF1 40524 91 + 1 CAUGGUAGUUCCACUUUAUUUGCAUUUUUAAUUUGUUCCUAAUUAAAUAUUCAUCUCUCUGUGCAUCUCACGCUGUGUCAUUUUACGGCAC ..(((.....))).......(((((.(((((((.......))))))).............)))))......((((((......)))))).. ( -13.74) >DroEre_CAF1 46387 91 + 1 CAUGGUAGUUCCACUUUAUUUGCAUUUUUAAUUUGUUCCUAAUUAAAUAUUCAUCUCUCUGUGCAUCUCACGCUGUGUCAUUUUACGGCUC ..(((.....))).......(((((.(((((((.......))))))).............)))))......((((((......)))))).. ( -13.24) >DroYak_CAF1 41040 91 + 1 CAUGGUAGAUCCACUUUAUUUGCAUUUUUAAUUUGUUCCUAAUUAAAUAUUCAUCUCUCUGUGCAUCUCACGCUGUGUCACUUUACGGCAC ....((((((.(((......((.((.(((((((.......))))))).)).)).......))).)))).))((((((......)))))).. ( -16.92) >consensus CAUGGUAGUUCCACUUUAUUUGCAUUUUUAAUUUGUUCCUAAUUAAAUAUUCAUCUCUCUGUGCAUCUCACGCUGUGUCAUUUUACGGCAC ....((((...(((......((.((.(((((((.......))))))).)).)).......)))...)).))((((((......)))))).. (-13.04 = -13.04 + 0.00)
Location | 372,245 – 372,352 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.47 |
Mean single sequence MFE | -34.60 |
Consensus MFE | -33.90 |
Energy contribution | -33.90 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.13 |
Mean z-score | -2.00 |
Structure conservation index | 0.98 |
SVM decision value | 3.09 |
SVM RNA-class probability | 0.998409 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 372245 107 + 22407834 CAUCUCUCUGUGCAUCUCACGCUGUGUCAUUUUACGGCACUUGAUUUAUUCGAAUAUCCCCUGAUUAAUUGAAGCCGACUCGCGGGAGAAAGUCGGCGAGAUGCGUG------------- ...........(((((((..((((((......))))))..........(((((..(((....)))...)))))(((((((..(....)..))))))))))))))...------------- ( -37.80) >DroSec_CAF1 39905 107 + 1 CAUCUCUCUGUGCAUCUCACGCUGUGUGAUUUUACGGCACUUGAUUUAUUCGAAUAUCCCCUGAUUAAUUGAAGCCGACUCGCGGGAGAAAGUCGGCGAGAUGCGUG------------- ...........(((((((..((((((......))))))..........(((((..(((....)))...)))))(((((((..(....)..))))))))))))))...------------- ( -37.80) >DroSim_CAF1 40575 107 + 1 CAUCUCUCUGUGCAUCUCACGCUGUGUCAUUUUACGGCACUUGAUUUAUUCGAAUAUCCCCUGAUUAAUUGAAGCCGACUCGCGGGAGAAAGUCGGCGAGAUGCGUG------------- ...........(((((((..((((((......))))))..........(((((..(((....)))...)))))(((((((..(....)..))))))))))))))...------------- ( -37.80) >DroEre_CAF1 46438 120 + 1 CAUCUCUCUGUGCAUCUCACGCUGUGUCAUUUUACGGCUCUUGAUUUAUUCGAAUAUCCCCUGAUUAAUUGGAGCCGACUCGCGGUAGAAAGUCGGCGAGGUAUAUAUACAUAUUUCCCU ........((((.(((((..((((((......))))))..........(((((..(((....)))...)))))(((((((..(....)..)))))))))))).))))............. ( -29.40) >DroYak_CAF1 41091 113 + 1 CAUCUCUCUGUGCAUCUCACGCUGUGUCACUUUACGGCACUUGAUUUAUUCGAAUAUCCCCUGAUUAAUUGAAGCCGACUCGCGGUAGAAAGUCUGCGAGCUGCGAGUAUGGA------- ......(((((((.((....((((((......))))))..........(((((..(((....)))...)))))((.(.(((((((........)))))))).)))))))))))------- ( -30.20) >consensus CAUCUCUCUGUGCAUCUCACGCUGUGUCAUUUUACGGCACUUGAUUUAUUCGAAUAUCCCCUGAUUAAUUGAAGCCGACUCGCGGGAGAAAGUCGGCGAGAUGCGUG_____________ ..........((((((((..((((((......))))))..........(((((..(((....)))...)))))(((((((..(....)..)))))))))))))))............... (-33.90 = -33.90 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:26:06 2006