Locus 1109

Sequence ID 2L_DroMel_CAF1
Location 3,009,506 – 3,009,626
Length 120
Max. P 0.595816
window1806

overview

Window 6

Location 3,009,506 – 3,009,626
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 88.76
Mean single sequence MFE -20.57
Consensus MFE -18.27
Energy contribution -18.60
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.59
Structure conservation index 0.89
SVM decision value 0.13
SVM RNA-class probability 0.595816
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3009506 120 + 22407834
CGGUCCGUUGGCCAAUCCAAGAGGUAUUUCAUAAAAAUAAAAAUGCCAAAGAUUAGCAAAAAAAAAAAAAAAUUCAAGCUGAUGAAGCUCAUUUGCAGAAAUAAUGAUCCAUCGGCAAAA
.((((....)))).........(((((((...........)))))))..............................(((((((....(((((.........)))))..))))))).... ( -21.30)
>DroSec_CAF1 16960 116 + 1
CGGUCCGUUGGCCAAUCCAAGAGGUAUUUCAUAA--AUAAAAAUGCCAGAGAUUAGCAAAAAA--AAAAAAAUUCAAGCUGAUGAAGCUCAUUUGCAGAAAUAAUGAUCAAUCGGCAAAA
.((((....)))).........(((((((.....--....)))))))................--............((((((...(.(((((.........))))).).)))))).... ( -19.70)
>DroEre_CAF1 17573 108 + 1
CGGUCCGUUGGCCAAUCCUAAAGGUAUUUCAUAA--AUAAAAAUGCCAAAGAUUAGCAAAAAA----------UCAAGCUGAUGAAAGUCAUUUGCAGAAAUAAUGUUCAAUCGGCGAAA
.((((....)))).........(((((((.....--....)))))))...((((.......))----------))..(((((((((.((.((((....)))).)).))).)))))).... ( -20.70)
>consensus
CGGUCCGUUGGCCAAUCCAAGAGGUAUUUCAUAA__AUAAAAAUGCCAAAGAUUAGCAAAAAA__AAAAAAAUUCAAGCUGAUGAAGCUCAUUUGCAGAAAUAAUGAUCAAUCGGCAAAA
.((((....)))).........(((((((...........)))))))..............................((((((((...(((((.........))))))).)))))).... (-18.27 = -18.60 +   0.33) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:55 2006