Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,009,506 – 3,009,626 |
Length | 120 |
Max. P | 0.595816 |
Location | 3,009,506 – 3,009,626 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.76 |
Mean single sequence MFE | -20.57 |
Consensus MFE | -18.27 |
Energy contribution | -18.60 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.59 |
Structure conservation index | 0.89 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.595816 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3009506 120 + 22407834 CGGUCCGUUGGCCAAUCCAAGAGGUAUUUCAUAAAAAUAAAAAUGCCAAAGAUUAGCAAAAAAAAAAAAAAAUUCAAGCUGAUGAAGCUCAUUUGCAGAAAUAAUGAUCCAUCGGCAAAA .((((....)))).........(((((((...........)))))))..............................(((((((....(((((.........)))))..))))))).... ( -21.30) >DroSec_CAF1 16960 116 + 1 CGGUCCGUUGGCCAAUCCAAGAGGUAUUUCAUAA--AUAAAAAUGCCAGAGAUUAGCAAAAAA--AAAAAAAUUCAAGCUGAUGAAGCUCAUUUGCAGAAAUAAUGAUCAAUCGGCAAAA .((((....)))).........(((((((.....--....)))))))................--............((((((...(.(((((.........))))).).)))))).... ( -19.70) >DroEre_CAF1 17573 108 + 1 CGGUCCGUUGGCCAAUCCUAAAGGUAUUUCAUAA--AUAAAAAUGCCAAAGAUUAGCAAAAAA----------UCAAGCUGAUGAAAGUCAUUUGCAGAAAUAAUGUUCAAUCGGCGAAA .((((....)))).........(((((((.....--....)))))))...((((.......))----------))..(((((((((.((.((((....)))).)).))).)))))).... ( -20.70) >consensus CGGUCCGUUGGCCAAUCCAAGAGGUAUUUCAUAA__AUAAAAAUGCCAAAGAUUAGCAAAAAA__AAAAAAAUUCAAGCUGAUGAAGCUCAUUUGCAGAAAUAAUGAUCAAUCGGCAAAA .((((....)))).........(((((((...........)))))))..............................((((((((...(((((.........))))))).)))))).... (-18.27 = -18.60 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:55 2006