Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,006,597 – 3,006,706 |
Length | 109 |
Max. P | 0.954785 |
Location | 3,006,597 – 3,006,706 |
---|---|
Length | 109 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.71 |
Mean single sequence MFE | -18.86 |
Consensus MFE | -12.27 |
Energy contribution | -12.60 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.91 |
Structure conservation index | 0.65 |
SVM decision value | 1.45 |
SVM RNA-class probability | 0.954785 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3006597 109 - 22407834 CUCGCCAAAAGCGAGAACAUAAAAACCCAAAAUCAAAAAAUCAAGCCGGACUUACUAGAGUCCCCCCCCCUCCCCGCUCUUUACCAUAGUCUACAGACAUUUU-----------UUGUUG (((((.....)))))..................((((((((......((((((....)))))).........................(((....))))))))-----------)))... ( -20.40) >DroSec_CAF1 14106 109 - 1 CUCGCCAAAAGCGAGAACAUAAAAACACAAG--------AUCAAGCCGGACUUAGUAGAGUCCCC---CCUCCCCCCUCUUUACCCUAAUCUAUAGACAUUUUUUGUUCAUUUUUUGUUG (((((.....)))))((((.((((..(((((--------(.......((((((....))))))..---.................(((.....))).....))))))...)))).)))). ( -19.70) >DroYak_CAF1 13798 108 - 1 CUUGCCAAAAGCUAGAACACAAAAACCCAAG--------AUCAAGCCGGACUUGGUAGAGUCCCCCCCA--UACCCCUCUUUACCAUAGUCUAUACAUAUUUU-UU-CUAUUUUCUGUUG ((.((.....)).))((((.((((....(((--------((......(((((((((((((.........--.......)))))))).)))))......)))))-..-...)))).)))). ( -16.49) >consensus CUCGCCAAAAGCGAGAACAUAAAAACCCAAG________AUCAAGCCGGACUUAGUAGAGUCCCCCCCCCUCCCCCCUCUUUACCAUAGUCUAUAGACAUUUU_U____AUUUUUUGUUG (((((.....)))))................................((((((....))))))......................................................... (-12.27 = -12.60 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:46 2006