Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,006,279 – 3,006,397 |
Length | 118 |
Max. P | 0.687627 |
Location | 3,006,279 – 3,006,397 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.28 |
Mean single sequence MFE | -25.58 |
Consensus MFE | -20.31 |
Energy contribution | -21.00 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.07 |
Mean z-score | -1.73 |
Structure conservation index | 0.79 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.687627 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3006279 118 - 22407834 AUUCUUUUGUUGUCUCUGGCAUUUCAUUAGUUUUCGGGCUGCUGAAAUUCUUUUCGAACUCCUCUGGCCAGCUACUUUCGAUUUU--UUGUCUUGUAUGGCUUUAUUUAGAGAACACAAA .....(((((..((((((((.(((((.(((((....))))).)))))(((.....)))........)))(((((..(..(((...--..)))..)..)))))......)))))..))))) ( -24.00) >DroSec_CAF1 13791 118 - 1 AUUCUUUUGUUGUCUCUGGCAUUUCAUUAGUUUUCGGGCUGCUGAAAUUCUUUUCGAACUCCCCUGGCCAGAUACUUUCGAUUUU--UUGCCUUCUAUGGCUUUAUUUAGAGAACACAAA .......((((.((((((((.(((((.(((((....))))).)))))(((.....)))........)))))).............--..(((......)))........)).)))).... ( -25.60) >DroEre_CAF1 14336 115 - 1 AUUCUUUUGUUGUCUCUGGCAUUUCAUUAGUUUUGGGGCUGCUGAAAUUCUUUUCAAAAUCC---GGCCAGCUACUUUCGAUUUU--UUGUCUUGAAUGGCUUUAUUUAGAGAACACAAA .....(((((..(((((((.................(((((.(((((....))))).....)---))))(((((.((..(((...--..)))..)).)))))....)))))))..))))) ( -24.30) >DroYak_CAF1 13487 117 - 1 AUUCUUUUGUUGUCGCUGGCAUUUCAUUAGUUUUGGGGCUGCUGAAAUUCUUCUCGAAGUCC---AGCCAGCUACUUUCGAUUUUUUUUUUCUGGAAUGGCUUUAUUUAGAGAACAAAAA ....(((((((.((((((((....((.......))(((((..(((........))).)))))---.))))))......(.(((((........))))).).........)).))))))). ( -28.40) >consensus AUUCUUUUGUUGUCUCUGGCAUUUCAUUAGUUUUCGGGCUGCUGAAAUUCUUUUCGAACUCC___GGCCAGCUACUUUCGAUUUU__UUGUCUUGAAUGGCUUUAUUUAGAGAACACAAA .......((((.((((((((.(((((.(((((....))))).)))))(((.....)))........)))))).................(((......)))........)).)))).... (-20.31 = -21.00 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:45 2006