Locus 1100

Sequence ID 2L_DroMel_CAF1
Location 3,004,915 – 3,005,026
Length 111
Max. P 0.950325
window1787

overview

Window 7

Location 3,004,915 – 3,005,026
Length 111
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.58
Mean single sequence MFE -29.36
Consensus MFE -25.66
Energy contribution -25.50
Covariance contribution -0.16
Combinations/Pair 1.14
Mean z-score -1.70
Structure conservation index 0.87
SVM decision value 1.40
SVM RNA-class probability 0.950325
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3004915 111 + 22407834
UCCCAGUGCACAUACCGCACUGGUGUUGGGUUACUCCAAAUAUUGCCCUUUUCAUCGCCGCCCGAUAGGAACUGUCUUU---------UAAUUAGUUCAUAAAUUCAGCGUGGAAAAGCU
..(((((((.......)))))))..(((((....))))).....((..((((((.(((..........((((((.....---------....)))))).........))))))))).)). ( -28.41)
>DroSec_CAF1 12465 110 + 1
UCCCAGUGCACAUACCGUACUGGUGUUGGGUUAC-CCACAUAUUGCUCUUUUCAUCGCCGCCCGAUAGGAACUGUCUUU---------UAAUUAGUUCACAAAUUCAGCGUGAAAAAGCU
..(((((((.......)))))))(((.(((...)-)))))....(((.((((((.(((..........((((((.....---------....)))))).........)))))))))))). ( -29.41)
>DroSim_CAF1 11812 111 + 1
CCCCAGUGCACAUACCGUACUGGUGUUGGGUUACCCCACAUAUUGCUCUUUUCAUCGCCGCCCGAUAGGAACUGUCUUU---------UAAUUAGUUCAUAAAUUCAGCGUGAAAAAGCU
..(((((((.......)))))))(((.(((....))))))....(((.((((((.(((..........((((((.....---------....)))))).........)))))))))))). ( -30.51)
>DroEre_CAF1 12422 111 + 1
UUGCAGUGCACAUACCGUAUUGGUGUUGGGUUACCCCACAUAUUGCUCUUUUCAUCGCCGCCCGAUAGGAACUGUCUUU---------UAAUUAGUUCAUAAAUUCAGCGUGGAAAAGCU
...((((((.......))))))((((.(((....)))))))...(((.((((((.(((..........((((((.....---------....)))))).........)))))))))))). ( -26.71)
>DroYak_CAF1 12097 119 + 1
CGCCAGUGCACUUGCCGUAUUGGUGUUGGGUUACCCCACAUACUGCUCUUUUCAUCGCCGCCCGAUUGGAACUGUCUUUUUAUUCAUUUAAUUAGUUCAUAAA-UCAGCGUGGAAAAGCU
(((((((((.......))))))))).((((....))))......(((.((((((.(((.....((((.((((((..................))))))...))-)).)))))))))))). ( -31.77)
>consensus
UCCCAGUGCACAUACCGUACUGGUGUUGGGUUACCCCACAUAUUGCUCUUUUCAUCGCCGCCCGAUAGGAACUGUCUUU_________UAAUUAGUUCAUAAAUUCAGCGUGGAAAAGCU
..(((((((.......)))))))...((((....))))......(((.((((((.(((..........((((((..................)))))).........)))))))))))). (-25.66 = -25.50 +  -0.16) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:37 2006