Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,004,915 – 3,005,026 |
Length | 111 |
Max. P | 0.950325 |
Location | 3,004,915 – 3,005,026 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.58 |
Mean single sequence MFE | -29.36 |
Consensus MFE | -25.66 |
Energy contribution | -25.50 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.14 |
Mean z-score | -1.70 |
Structure conservation index | 0.87 |
SVM decision value | 1.40 |
SVM RNA-class probability | 0.950325 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3004915 111 + 22407834 UCCCAGUGCACAUACCGCACUGGUGUUGGGUUACUCCAAAUAUUGCCCUUUUCAUCGCCGCCCGAUAGGAACUGUCUUU---------UAAUUAGUUCAUAAAUUCAGCGUGGAAAAGCU ..(((((((.......)))))))..(((((....))))).....((..((((((.(((..........((((((.....---------....)))))).........))))))))).)). ( -28.41) >DroSec_CAF1 12465 110 + 1 UCCCAGUGCACAUACCGUACUGGUGUUGGGUUAC-CCACAUAUUGCUCUUUUCAUCGCCGCCCGAUAGGAACUGUCUUU---------UAAUUAGUUCACAAAUUCAGCGUGAAAAAGCU ..(((((((.......)))))))(((.(((...)-)))))....(((.((((((.(((..........((((((.....---------....)))))).........)))))))))))). ( -29.41) >DroSim_CAF1 11812 111 + 1 CCCCAGUGCACAUACCGUACUGGUGUUGGGUUACCCCACAUAUUGCUCUUUUCAUCGCCGCCCGAUAGGAACUGUCUUU---------UAAUUAGUUCAUAAAUUCAGCGUGAAAAAGCU ..(((((((.......)))))))(((.(((....))))))....(((.((((((.(((..........((((((.....---------....)))))).........)))))))))))). ( -30.51) >DroEre_CAF1 12422 111 + 1 UUGCAGUGCACAUACCGUAUUGGUGUUGGGUUACCCCACAUAUUGCUCUUUUCAUCGCCGCCCGAUAGGAACUGUCUUU---------UAAUUAGUUCAUAAAUUCAGCGUGGAAAAGCU ...((((((.......))))))((((.(((....)))))))...(((.((((((.(((..........((((((.....---------....)))))).........)))))))))))). ( -26.71) >DroYak_CAF1 12097 119 + 1 CGCCAGUGCACUUGCCGUAUUGGUGUUGGGUUACCCCACAUACUGCUCUUUUCAUCGCCGCCCGAUUGGAACUGUCUUUUUAUUCAUUUAAUUAGUUCAUAAA-UCAGCGUGGAAAAGCU (((((((((.......))))))))).((((....))))......(((.((((((.(((.....((((.((((((..................))))))...))-)).)))))))))))). ( -31.77) >consensus UCCCAGUGCACAUACCGUACUGGUGUUGGGUUACCCCACAUAUUGCUCUUUUCAUCGCCGCCCGAUAGGAACUGUCUUU_________UAAUUAGUUCAUAAAUUCAGCGUGGAAAAGCU ..(((((((.......)))))))...((((....))))......(((.((((((.(((..........((((((..................)))))).........)))))))))))). (-25.66 = -25.50 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:37 2006