| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,004,192 – 3,004,286 |
| Length | 94 |
| Max. P | 0.665759 |
| Location | 3,004,192 – 3,004,286 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 84.87 |
| Mean single sequence MFE | -34.02 |
| Consensus MFE | -27.06 |
| Energy contribution | -26.82 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.665759 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3004192 94 - 22407834 GCGAAAAGAGAGAGGCUUCGGCGGAGCUGGGGAAAUGUCAAAACGUACGCUUCAUUGCCGUCGCCUGUCUGCUGUCUUCUGUCUUUUGGC-------UUCA------------------- ((.((((((.(((((...(((((((.(.((.((.((((....))))..((......))..)).)).)))))))).))))).)))))).))-------....------------------- ( -33.70) >DroSec_CAF1 11771 94 - 1 GCCAAAAGAGAGAGGCUUUGGCAGAGCUGGGGAAAUGUCAAAACGUACGCUUCAUUGCCGUCGCCUGUCUGCUGUCUUCUGUCUUCUGGC-------UUCA------------------- ((((.((((.(((((...(((((((.(.((.((.((((....))))..((......))..)).)).)))))))).))))).)))).))))-------....------------------- ( -32.90) >DroSim_CAF1 11125 94 - 1 GCCAAAAGAGAGAGGCUUUGGCAGAGCUGGGGAAAUGUCAAAACGUACGCUUCAUUGCCGUCGCCUGUCUGCUGUCUUCUGUCUUCUGGC-------UUCA------------------- ((((.((((.(((((...(((((((.(.((.((.((((....))))..((......))..)).)).)))))))).))))).)))).))))-------....------------------- ( -32.90) >DroEre_CAF1 11799 90 - 1 GCCAAAAGAGAGAGGCUUUGGCGGAGCUGGAGAAAUGUCAAAACGUACGCUUCAUUGCCGUCGCCUGUCUGCUGUCUGCUGUCUUCUGGC------------------------------ ((((.((((((.((((...(((((...(((((..((((....))))...)))))...))))))))).)).((.....))..)))).))))------------------------------ ( -32.00) >DroYak_CAF1 11437 120 - 1 GCCAAAAGAGAGAGGCUUUGGCGGAGCUGGAGAAAUGUCAAAACGUACGCUUCAUUGCCGUCGCCUGUCUUCUGUCUGCUGUCUUCUGUCUUUUGGCUUCAGUCUUCUGGCUUCAGUAUU (((((((((.((((((...(((((...(((((..((((....))))...)))))...)))))((..(.(....).).)).).))))).)))))))))...((((....))))........ ( -38.60) >consensus GCCAAAAGAGAGAGGCUUUGGCGGAGCUGGGGAAAUGUCAAAACGUACGCUUCAUUGCCGUCGCCUGUCUGCUGUCUUCUGUCUUCUGGC_______UUCA___________________ ((((.((((.((((((..((((((...(((((..((((....))))...)))))))))))..))))(.(....).)..)).)))).)))).............................. (-27.06 = -26.82 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:36 2006