Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,003,417 – 3,003,536 |
Length | 119 |
Max. P | 0.690131 |
Location | 3,003,417 – 3,003,536 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.15 |
Mean single sequence MFE | -23.29 |
Consensus MFE | -16.42 |
Energy contribution | -17.02 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.14 |
Mean z-score | -1.96 |
Structure conservation index | 0.71 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.690131 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3003417 119 - 22407834 AGUGUAUGCCACAUUCGUCAUCUGUGGUUUGCAUUUAUUUACCAAUAUGUUUGUUGUCACUGCUUUCUGUUGAGCAAACAAGUUU-UUUGGUAUUUUUUUUUAUUAUUAUUGUUCAUCUC ((((((.((((((.........)))))).))))))....((((((.(..((((((.....(((((......)))))))))))..)-.))))))........................... ( -25.10) >DroSec_CAF1 10989 114 - 1 AGUGUAUGCCACAUUCGUCAUCUGUGGUUUGCAUUUGUUUACCAAUAUGUUUGUUGUCACUGCUUUCUGUUGAGCAAACAAGUUU-UUUGGUAUUUUU--UUU---UUAUUGUCCAUCUC ((((((.((((((.........)))))).))))))....((((((.(..((((((.....(((((......)))))))))))..)-.)))))).....--...---.............. ( -25.10) >DroSim_CAF1 10346 116 - 1 AGUGUAUGCCACAUUCGUCAUCUGUGGUUUGCAUUUGUUUACCAAUAUGUUUGUUGUCACUGCUUUCUGUUGAGCAAACAAGUUU-UUUGGUAUUUUUUUUUU---UUAUUGUCCAUCUC ((((((.((((((.........)))))).))))))....((((((.(..((((((.....(((((......)))))))))))..)-.))))))..........---.............. ( -25.10) >DroEre_CAF1 10996 111 - 1 AGUGUACGCCAUAUUCGGCGUCAGUGGGUUGCAUUUAUUUACCAAUAUGUUUAUUGUCGUUACUUUCUGUUGAACAAACAAGUUU-UUUGGUAUUUUC--------UUAUUGUCCAUCUC ..((.(((((......)))))))(((((...........((((((..(((((....(((..((.....)))))..))))).....-.)))))).....--------......)))))... ( -18.95) >DroYak_CAF1 10571 108 - 1 AGUGUAUGCCAUAUUCGUCAUCGGUG----GCAUAUAUUUACCAAUAUGUACGUUGUCAUUGCUUUCUGUUGAACAAACAAGUUUUUUUGGUAGUUUU--------UUAUGGUCCAUCUC .(((((((((((...((....)))))----))))))))(((((((.....((.((((((..((.....)))).))))....))....)))))))....--------.............. ( -22.20) >consensus AGUGUAUGCCACAUUCGUCAUCUGUGGUUUGCAUUUAUUUACCAAUAUGUUUGUUGUCACUGCUUUCUGUUGAGCAAACAAGUUU_UUUGGUAUUUUU__UU____UUAUUGUCCAUCUC .(((((.(((((...........))))).))))).....((((((..(((((((..(((..((.....)))))))))))).......))))))........................... (-16.42 = -17.02 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:33 2006