Locus 1094

Sequence ID 2L_DroMel_CAF1
Location 3,002,358 – 3,002,478
Length 120
Max. P 0.922796
window1778

overview

Window 8

Location 3,002,358 – 3,002,478
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 98.00
Mean single sequence MFE -41.46
Consensus MFE -39.80
Energy contribution -40.00
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.46
Structure conservation index 0.96
SVM decision value 1.15
SVM RNA-class probability 0.922796
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3002358 120 + 22407834
UUGGCCACAUUUUCUCACACAGAGUGCGCAGAAAUACUUGGCAGGCCACUCUGGCAAUUGGCGCGCCUCUGGAAAUGACAAACGGUCAUGAGCAUGUGGCUCCGGCCCACGAGGAAGCAC
..((((((((...(((...(((((.((((.(...((.(((.((((....)))).))).)).))))))))))...(((((.....)))))))).))))))))...((((....))..)).. ( -41.20)
>DroSec_CAF1 9898 120 + 1
UUGGCCACAUUUUCUCACACAGAGAGCGCAGAAAUACUUGGCAGGCCACUCUGGCAAUUGGCGCGCCUCUGGAAAUGACAAACGGUCAUGAGCAUGUGGCUCCGGCCCACAAGGAAGCAC
..((((((((...(((...(((((.((((.(...((.(((.((((....)))).))).)).))))))))))...(((((.....)))))))).))))))))...((((....))..)).. ( -41.20)
>DroSim_CAF1 9257 120 + 1
UUGGCCACAUUUUCUCACACAGAGAGCGCAGAAAUACUUGGCAGGCCACUCUGGCAAUUGGCGCGCCUCUGGAAAUGACAAACGGUCAUGAGCAUGUGGCUCCGGCCCACAAGGAAGCAC
..((((((((...(((...(((((.((((.(...((.(((.((((....)))).))).)).))))))))))...(((((.....)))))))).))))))))...((((....))..)).. ( -41.20)
>DroEre_CAF1 9914 120 + 1
UUGGCCACAUUUUCUCACACAGCGAGCGCAGAAAUACUUCGCAGGCCACUCUGGCAAUUGGCGCGCCUCUGGAAAUGACAAACGGUCAUGAGUAUGUGGCUCCGGCCCACGAGGAAGCAC
..((((((((...(((...(((.(.((((.(((....)))((..(((.....))).....))))))).)))...(((((.....)))))))).))))))))...((((....))..)).. ( -40.30)
>DroYak_CAF1 9483 120 + 1
UUGGCCACAUUUUCUCACACAGAGAGCGCAGAAAUACUUCGCAGGCCACUCUGGCAAUUGGCGCGCCUCUGGAAAUGACAAACGGUCAUGAGCAUGUGGCUCCGGCCCACGAGGAAGCAC
..((((((((...(((...(((((.((((.(((....)))((..(((.....))).....)))))))))))...(((((.....)))))))).))))))))...((((....))..)).. ( -43.40)
>consensus
UUGGCCACAUUUUCUCACACAGAGAGCGCAGAAAUACUUGGCAGGCCACUCUGGCAAUUGGCGCGCCUCUGGAAAUGACAAACGGUCAUGAGCAUGUGGCUCCGGCCCACGAGGAAGCAC
..((((((((...(((...(((((.((((((.....))..((..(((.....))).....)))))))))))...(((((.....)))))))).))))))))...((((....))..)).. (-39.80 = -40.00 +   0.20) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:28 2006