Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,002,358 – 3,002,478 |
Length | 120 |
Max. P | 0.922796 |
Location | 3,002,358 – 3,002,478 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.00 |
Mean single sequence MFE | -41.46 |
Consensus MFE | -39.80 |
Energy contribution | -40.00 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.46 |
Structure conservation index | 0.96 |
SVM decision value | 1.15 |
SVM RNA-class probability | 0.922796 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3002358 120 + 22407834 UUGGCCACAUUUUCUCACACAGAGUGCGCAGAAAUACUUGGCAGGCCACUCUGGCAAUUGGCGCGCCUCUGGAAAUGACAAACGGUCAUGAGCAUGUGGCUCCGGCCCACGAGGAAGCAC ..((((((((...(((...(((((.((((.(...((.(((.((((....)))).))).)).))))))))))...(((((.....)))))))).))))))))...((((....))..)).. ( -41.20) >DroSec_CAF1 9898 120 + 1 UUGGCCACAUUUUCUCACACAGAGAGCGCAGAAAUACUUGGCAGGCCACUCUGGCAAUUGGCGCGCCUCUGGAAAUGACAAACGGUCAUGAGCAUGUGGCUCCGGCCCACAAGGAAGCAC ..((((((((...(((...(((((.((((.(...((.(((.((((....)))).))).)).))))))))))...(((((.....)))))))).))))))))...((((....))..)).. ( -41.20) >DroSim_CAF1 9257 120 + 1 UUGGCCACAUUUUCUCACACAGAGAGCGCAGAAAUACUUGGCAGGCCACUCUGGCAAUUGGCGCGCCUCUGGAAAUGACAAACGGUCAUGAGCAUGUGGCUCCGGCCCACAAGGAAGCAC ..((((((((...(((...(((((.((((.(...((.(((.((((....)))).))).)).))))))))))...(((((.....)))))))).))))))))...((((....))..)).. ( -41.20) >DroEre_CAF1 9914 120 + 1 UUGGCCACAUUUUCUCACACAGCGAGCGCAGAAAUACUUCGCAGGCCACUCUGGCAAUUGGCGCGCCUCUGGAAAUGACAAACGGUCAUGAGUAUGUGGCUCCGGCCCACGAGGAAGCAC ..((((((((...(((...(((.(.((((.(((....)))((..(((.....))).....))))))).)))...(((((.....)))))))).))))))))...((((....))..)).. ( -40.30) >DroYak_CAF1 9483 120 + 1 UUGGCCACAUUUUCUCACACAGAGAGCGCAGAAAUACUUCGCAGGCCACUCUGGCAAUUGGCGCGCCUCUGGAAAUGACAAACGGUCAUGAGCAUGUGGCUCCGGCCCACGAGGAAGCAC ..((((((((...(((...(((((.((((.(((....)))((..(((.....))).....)))))))))))...(((((.....)))))))).))))))))...((((....))..)).. ( -43.40) >consensus UUGGCCACAUUUUCUCACACAGAGAGCGCAGAAAUACUUGGCAGGCCACUCUGGCAAUUGGCGCGCCUCUGGAAAUGACAAACGGUCAUGAGCAUGUGGCUCCGGCCCACGAGGAAGCAC ..((((((((...(((...(((((.((((((.....))..((..(((.....))).....)))))))))))...(((((.....)))))))).))))))))...((((....))..)).. (-39.80 = -40.00 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:28 2006