Locus 1092

Sequence ID 2L_DroMel_CAF1
Location 3,000,970 – 3,001,070
Length 100
Max. P 0.557670
window1775

overview

Window 5

Location 3,000,970 – 3,001,070
Length 100
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 89.35
Mean single sequence MFE -24.33
Consensus MFE -19.14
Energy contribution -19.58
Covariance contribution 0.44
Combinations/Pair 1.05
Mean z-score -1.45
Structure conservation index 0.79
SVM decision value 0.05
SVM RNA-class probability 0.557670
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3000970 100 + 22407834
GGCAACAGCA-GCAGCAGCAUUAACCCAUUAACGCGAAAGGGAGAAAUCGGCCAAGAAAUGCAAAUGCAUUGUCCAUGGGUUAAAUGGAAAGGCGGG--AUGG
(....).((.-...))........(((.....(.(....).)........(((....(((((....))))).(((((.......)))))..))))))--.... ( -25.50)
>DroSec_CAF1 8529 96 + 1
GGC------A-GCAGCAGCAUUAACCCAUUAACGCGAAAGGGAGAAAUCGGCCAAGAAAUGCAAAUGCAUUUUCCAUGGGUUAAAUGGAAAGGCGGGAGAUGG
.((------.-...))..((((..(((.....(.(....).)........(((...((((((....))))))(((((.......)))))..)))))).)))). ( -25.90)
>DroSim_CAF1 7895 96 + 1
GGC------A-GCAGCAGCAUUAACCCAUUAACGCGAAAGGGAGAAAUCGGCCAAGAAAUGCAAAUGCAUUUUCCAUGGGUUAAAUGGAAAGGCGGGAGAUGG
.((------.-...))..((((..(((.....(.(....).)........(((...((((((....))))))(((((.......)))))..)))))).)))). ( -25.90)
>DroEre_CAF1 8524 93 + 1
GGCAC-------CAGCAGCAUUAACCCAUUAACGCGAAAGGGAGAAAUCGGCCAAGAAAUGCAAAUGCCUUUUCCAUGGGUUAAAUGGAAAGGAG---AAUGC
(((.(-------(....((.((((....)))).))....))((....)).))).......(((....(((((.((((.......)))))))))..---..))) ( -22.30)
>DroYak_CAF1 8026 100 + 1
GGCACCAACAACCAGCAGCAUUAACCCAUUAACGCGAAAGGGAGAAAUCGGCCAAGAAAUGCAAAUGCCUUUUCCAUGGGUUAAGUGGAAAGGAG---AAUGU
...........((..(.((.(((((((((.....(....)((((((...(((..............)))))))))))))))))))).)...))..---..... ( -22.04)
>consensus
GGCA_____A_GCAGCAGCAUUAACCCAUUAACGCGAAAGGGAGAAAUCGGCCAAGAAAUGCAAAUGCAUUUUCCAUGGGUUAAAUGGAAAGGCGGG_AAUGG
..................(((((((((((...(.(....).).......((....(((((((....)))))))))))))))).))))................ (-19.14 = -19.58 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:25 2006