| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,994,192 – 2,994,312 |
| Length | 120 |
| Max. P | 0.631845 |
| Location | 2,994,192 – 2,994,312 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 96.11 |
| Mean single sequence MFE | -48.17 |
| Consensus MFE | -43.89 |
| Energy contribution | -43.57 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.631845 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2994192 120 - 22407834 UGGACAUUCUGCAUAAGAACCACGCACAGCUGGUUCAGCAGGAUCACCAGGCGCUUCUCGAGAUCGGGCGGAAAGAUCUCGCCCUGGCUGGAUGCCAGUAUCUUGAGCAGGGGUCGCAGG (((..(((((((....((((((.((...)))))))).)))))))..)))(((.(((((((((((((((((((....)).)))))((((.....))))).)))))))).))).)))..... ( -51.80) >DroSim_CAF1 5929 120 - 1 UGGACAUUCUGCAUGAGAACCACGCACAGUUGGUUCAGCAGAAUCACGAGGCGCUUCUCGAGAUCGGGCGGAAAGAUCUCGCCCUGGCUGGAUGCCAGUAUCUUGAGCAGGGGUCGCAGG .....(((((((....(((((((.....).)))))).)))))))...(.(((.(((((((((((((((((((....)).)))))((((.....))))).)))))))).))).))).)... ( -48.40) >DroYak_CAF1 5963 120 - 1 UGGACAUUCUGCAUGAGAACUACGCACAGCUGGUUCAGCAGGAUCACGAGGCGCUUCUCGAGAUCGGGCGGAAAGAUCUCUCCCUGGCUGGAUGCCAGUAUCUUGAGCAGCGGUCGCAGG ((((((((((((....((((((.((...)))))))).))))))).......((((.((((((((((((.(((......))))))((((.....))))).)))))))).))))))).)).. ( -44.30) >consensus UGGACAUUCUGCAUGAGAACCACGCACAGCUGGUUCAGCAGGAUCACGAGGCGCUUCUCGAGAUCGGGCGGAAAGAUCUCGCCCUGGCUGGAUGCCAGUAUCUUGAGCAGGGGUCGCAGG ((((((((((((....((((((.((...)))))))).))))))).......(.((.((((((((((((((((....)).)))))((((.....))))).)))))))).)).)))).)).. (-43.89 = -43.57 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:17 2006