Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,992,593 – 2,992,689 |
Length | 96 |
Max. P | 0.921042 |
Location | 2,992,593 – 2,992,689 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 77.53 |
Mean single sequence MFE | -22.75 |
Consensus MFE | -17.53 |
Energy contribution | -17.73 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.35 |
Mean z-score | -1.57 |
Structure conservation index | 0.77 |
SVM decision value | 1.14 |
SVM RNA-class probability | 0.921042 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2992593 96 - 22407834 AUUUAUUUAAUUCCAUUU---CCCUAAUCAUUUAUUCCUAAAGCGGCGCAGUCUGGCUCCCAGCCAACGUGGACCACUGCGUCCCGAGUCCCGUCACUC ..................---.....................((((.((....((((.....)))).((.((((......)))))).)).))))..... ( -19.00) >DroSec_CAF1 4380 95 - 1 AUUUAUUUAAUUCCAUUC---CCUUAACCAUUU-UUCCUAAAGCGGCGCAGUCUGGCUCCUAGCCAACGUGGACCACUGCGUCCCGAGUCGCGCCACUC ..................---............-.......((.(((((....((((.....)))).((.((((......))))))....))))).)). ( -24.50) >DroSim_CAF1 4342 96 - 1 AUUUAUUUCAUUUCAUUC---CCUUAACCAUUUUUUCCUAAAGCGGCGCAGUCUGGCUCCUAGCCAACGUGGACCACUGCGUCCCGAGUCGCGCCACUC ..................---....................((.(((((....((((.....)))).((.((((......))))))....))))).)). ( -24.50) >DroEre_CAF1 4326 95 - 1 AUUU-UUUAUUACCACUU---GUUUAAUCAUUUUUUCCAAAAGCGGCGCAGCUUGGCUCCCAGCCAACGUGGACCACUGCGUCCCGAGUCGCGUCACUC ....-.............---....................((.(((((.(((((((.....)))).((.((((......))))))))).))))).)). ( -23.40) >DroYak_CAF1 4339 96 - 1 AUUUAAUUAUUUUCAAUG---UUUUAACCAUUUUUCCCCAAAGCGGCGCAGUCUGGCUCCCAGCCAACGUGGGCCAAUGCGUCCCGAGUCGCGCCACUC ..................---....................((.(((((....((((.....)))).((.((((......))))))....))))).)). ( -23.90) >DroPer_CAF1 4150 99 - 1 AGUUAAUUAAUUAAAUCCCUUUUUGACUCGUUUUCAAUUGCAGCGUCGCAGCCUGGCUCCCAGCCAACGAGGGGGACAAAGACUUUCGUCUCGAAAUGA ...............(((((......((((((.....((((......))))...(((.....))))))))))))))...((((....))))........ ( -21.20) >consensus AUUUAUUUAAUUCCAUUC___CCUUAACCAUUUUUUCCUAAAGCGGCGCAGUCUGGCUCCCAGCCAACGUGGACCACUGCGUCCCGAGUCGCGCCACUC .........................................((.(((((....((((.....)))).((.((((......))))))....))))).)). (-17.53 = -17.73 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:05 2006