Locus 1082

Sequence ID 2L_DroMel_CAF1
Location 2,981,600 – 2,981,697
Length 97
Max. P 0.517228
window1753

overview

Window 3

Location 2,981,600 – 2,981,697
Length 97
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 83.78
Mean single sequence MFE -34.30
Consensus MFE -25.74
Energy contribution -26.35
Covariance contribution 0.61
Combinations/Pair 1.26
Mean z-score -1.57
Structure conservation index 0.75
SVM decision value -0.03
SVM RNA-class probability 0.517228
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2981600 97 - 22407834
CGCUGCUGGCGACGCACGCACCGUCGCCGAAAGCAGUAACAGUCAAGUAGAUCCAUCUACCGCGUCGCCGCACAAUGCUCCAGCUACGGAACAGCAC
.((((..((((((((..(.((.((..((....)..)..)).)))..(((((....))))).))))))))((.....))(((......))).)))).. ( -34.00)
>DroSec_CAF1 1423 97 - 1
CGCUGGUGGCGAUGCACGCACCGCCGCCGAAAGCAGUAACAGUCAAGUAGAUCCAUCUACCGCGUCGCCGCACAAUGCUCUAGCUGCGGAACAGCAC
.((((((((((((((.......((.(.(....)).)).........(((((....))))).))))))))))....(((.......)))...)))).. ( -34.50)
>DroSim_CAF1 1437 97 - 1
CGCUGGUGGCGAUGCACGCACCGCUGCCGAAAGCAGUAACAGUCAAGUAGAUCCAUCUACCGCGUCGCCGCACAAUGCUCCAGCUGCGGAACAGCAC
.((((((((((((((.......((((.(....))))).........(((((....))))).)))))))))).......(((......))).)))).. ( -39.80)
>DroEre_CAF1 1404 97 - 1
CGCAGGUGGCGACGCACGCACCGCCAUCGAAAGCAGUAACAGUCAAGUAGAUCCAUCCACCGCGUCGCCGCACAAUGCUCCAGCCGCGGAACAGCAC
.((..((((((((((....((.((........)).))....(((.....))).........))))))))))....((.(((......))).)))).. ( -29.30)
>DroYak_CAF1 1405 97 - 1
CGCUGGUGGCGAUGCACGCACCGUCACCGAAAGCAGCAACAGUCAAGUAGAUCCAUCCGCCGCGUCGCCGCACAAUGCUCCAGCCGCGGAACAGCAC
.((((((((((((((..((...((...(....)..))....(((.....)))......)).)))))))))).......(((......))).)))).. ( -31.60)
>DroAna_CAF1 4263 85 - 1
GGCUG-UGGUG-----------GCCACCGAGAGCAACGCCAGUCAGGCGGAUCAGUCCGCCGGAUCGCCGCACAAUGCUGCGGCCGCUGAACAGACC
(((((-(((((-----------(((.((..(.((...))).....((((((....))))))))...((.((.....)).)))))))))..)))).)) ( -36.60)
>consensus
CGCUGGUGGCGAUGCACGCACCGCCACCGAAAGCAGUAACAGUCAAGUAGAUCCAUCCACCGCGUCGCCGCACAAUGCUCCAGCCGCGGAACAGCAC
.((((((((((((((.......((........))............(((((....))))).)))))))))).....((....)).......)))).. (-25.74 = -26.35 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:04 2006