Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,980,597 – 2,980,759 |
Length | 162 |
Max. P | 0.842586 |
Location | 2,980,597 – 2,980,700 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 79.29 |
Mean single sequence MFE | -39.52 |
Consensus MFE | -26.39 |
Energy contribution | -26.75 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.19 |
Mean z-score | -1.76 |
Structure conservation index | 0.67 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.842586 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2980597 103 + 22407834 AAUCCACUUGCAGGAACAAAGCCCGUUU--------CGAUCAUUACCUAUCGCGGGAUUGCCAUCGCUCCAUUUCCGGCGUGUAGCCGGAUGGCGCGGGCGGUGGAUCAUA .(((((((.((.((.......((((...--------((((........))))))))....)).((((.(((..((((((.....))))))))).))))))))))))).... ( -41.50) >DroPse_CAF1 422 108 + 1 AAAACUCUCAAA---UUGAAGUUUUUUUCCGCUAAGUGGGCGUUACCGUUCUCUGGCGUGCCAACGCUCCAGUUCCGGCGUAUAGCCCGACGGAGCAGGCAGUGCCUCGUA ((((((.((...---..)))))))).........((.(((((....))))).))((((((((...(((((.((.(.(((.....))).)))))))).)))).))))..... ( -34.00) >DroSec_CAF1 420 103 + 1 AAUCCACUUGAAGGAACGAAGGCCACUU--------CGAUCAUUACCUUUCGCGGGAAUUCCACCGCUCCAUUUCCGGCGUGUAGCCGGAUGGCGCGGGCGGUGGAUCGUA .((((((......((.(((((....)))--------)).)).........(((.((....)).((((.(((..((((((.....))))))))).))))))))))))).... ( -44.90) >DroSim_CAF1 434 103 + 1 AAUCCACUUGAAGGAACGAAGGCCACUU--------GGAUCAUUACCUUUCGCGGGAAUUCCACCGCUCCAUUUCCGGCGGGUAGCCGGAUGGCGCGGGCGGUGGAUCGUA .((((((..(((((((.((...((....--------)).)).)).)))))(((.((....)).((((.(((..((((((.....))))))))).))))))))))))).... ( -42.70) >DroEre_CAF1 393 102 + 1 AAUUCU-AUGCAAGGACCAAGUCCACUU--------CGAUCAUUACCUUUCGCGGGAAUGCCACCGCUCCAUUUCCGGGGUGUAGCCGGAUGGCGCGGGCGGUGGAUCGUA ......-......((((...))))....--------(((((....(((.....)))...(((.((((.(((..(((((.......)))))))).))))..))).))))).. ( -34.90) >DroYak_CAF1 400 102 + 1 AAUACU-UUGGAAGAACGAAGCCCACUG--------CGAUCAUUACCUUUCGCGGGAAUGCCACCGCUCCAUUUCCGGGGUGUAGCCGGAUGGCGCGGGCGGUGGAUCAUA ....((-(((......))))).((((((--------(...((((.(((.....)))))))...((((.(((..(((((.......)))))))).)))))))))))...... ( -39.10) >consensus AAUCCACUUGAAGGAACGAAGCCCACUU________CGAUCAUUACCUUUCGCGGGAAUGCCACCGCUCCAUUUCCGGCGUGUAGCCGGAUGGCGCGGGCGGUGGAUCGUA .....................................((((....(((.....))).....((((((((....((((((.....))))))......))))))))))))... (-26.39 = -26.75 + 0.36)
Location | 2,980,597 – 2,980,700 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 79.29 |
Mean single sequence MFE | -37.73 |
Consensus MFE | -24.05 |
Energy contribution | -24.30 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.22 |
Mean z-score | -1.71 |
Structure conservation index | 0.64 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.773488 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2980597 103 - 22407834 UAUGAUCCACCGCCCGCGCCAUCCGGCUACACGCCGGAAAUGGAGCGAUGGCAAUCCCGCGAUAGGUAAUGAUCG--------AAACGGGCUUUGUUCCUGCAAGUGGAUU ...(((((((.((((((.(((((((((.....))))))..))).)))..)))...((((((((........))))--------...))))..((((....))))))))))) ( -40.50) >DroPse_CAF1 422 108 - 1 UACGAGGCACUGCCUGCUCCGUCGGGCUAUACGCCGGAACUGGAGCGUUGGCACGCCAGAGAACGGUAACGCCCACUUAGCGGAAAAAAACUUCAA---UUUGAGAGUUUU .....(((..((((((((((.((.(((.....))).))...))))))..)))).)))..(((((((.....))..(((((..(((......)))..---.))))).))))) ( -34.00) >DroSec_CAF1 420 103 - 1 UACGAUCCACCGCCCGCGCCAUCCGGCUACACGCCGGAAAUGGAGCGGUGGAAUUCCCGCGAAAGGUAAUGAUCG--------AAGUGGCCUUCGUUCCUUCAAGUGGAUU .....(((((((((((.....((((((.....))))))..))).))))))))....((((..((((.......((--------(((....)))))..))))...))))... ( -42.10) >DroSim_CAF1 434 103 - 1 UACGAUCCACCGCCCGCGCCAUCCGGCUACCCGCCGGAAAUGGAGCGGUGGAAUUCCCGCGAAAGGUAAUGAUCC--------AAGUGGCCUUCGUUCCUUCAAGUGGAUU .....(((((((((((.....((((((.....))))))..))).))))))))....((((..((((.(((((.((--------....))...)))))))))...))))... ( -43.90) >DroEre_CAF1 393 102 - 1 UACGAUCCACCGCCCGCGCCAUCCGGCUACACCCCGGAAAUGGAGCGGUGGCAUUCCCGCGAAAGGUAAUGAUCG--------AAGUGGACUUGGUCCUUGCAU-AGAAUU ..((((((((((((((.....(((((.......)))))..))).)))))))((((.((......)).))))))))--------....((((...))))......-...... ( -33.20) >DroYak_CAF1 400 102 - 1 UAUGAUCCACCGCCCGCGCCAUCCGGCUACACCCCGGAAAUGGAGCGGUGGCAUUCCCGCGAAAGGUAAUGAUCG--------CAGUGGGCUUCGUUCUUCCAA-AGUAUU .(((((((((.((((((.((((((((.......)))))..))).)))).((((((.((......)).)))).)))--------).)))))..))))........-...... ( -32.70) >consensus UACGAUCCACCGCCCGCGCCAUCCGGCUACACGCCGGAAAUGGAGCGGUGGCAUUCCCGCGAAAGGUAAUGAUCG________AAGUGGACUUCGUUCCUUCAAGAGGAUU ...((((.(((...(((.(((((((((.....))))))..))).)))((((.....))))....)))...))))..................................... (-24.05 = -24.30 + 0.25)
Location | 2,980,660 – 2,980,759 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 83.01 |
Mean single sequence MFE | -37.88 |
Consensus MFE | -30.04 |
Energy contribution | -30.82 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.14 |
Mean z-score | -1.65 |
Structure conservation index | 0.79 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.665056 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2980660 99 - 22407834 GCAAUUCCCGGCGCCAGGGCCCCACCUCCCCAUCUACACCC---------CGUACUGGCCGGGGCGGCUAUGAUCCACCGCCCGCGCCAUCCGGCUACACGCCGGAAA .........(((((...((((....................---------......)))).((((((..........))))))))))).((((((.....)))))).. ( -39.17) >DroSec_CAF1 483 99 - 1 GCAAUUCCCGGCGCCAGGGCCCCACCUCCCCAUCCACACCC---------CGUAAAGGCCGGGGCGGCUACGAUCCACCGCCCGCGCCAUCCGGCUACACGCCGGAAA .........(((((...((((....................---------......)))).((((((..........))))))))))).((((((.....)))))).. ( -39.37) >DroSim_CAF1 497 99 - 1 GCAAUUCACGGCGCCAGGGCCCCACCUCCCCAUCCACACCC---------CGUAAAGGCUGGGGCGGCUACGAUCCACCGCCCGCGCCAUCCGGCUACCCGCCGGAAA .........(((((..((((....((.(((((.((......---------......)).))))).))....(......)))))))))).((((((.....)))))).. ( -40.70) >DroEre_CAF1 455 99 - 1 GCAAUUCCCGUCGCCAAGGCCCCACCUCCCCAUCUACGCCU---------CGUGGCGGCCGGGGCGGCUACGAUCCACCGCCCGCGCCAUCCGGCUACACCCCGGAAA ((.....(.(((((((((((.................))))---------..))))))).)((((((..........))))))))....(((((.......))))).. ( -36.53) >DroYak_CAF1 462 99 - 1 GCAAUUCCCGGCGCCAGGGCCCCACAUCCCCAUCUACGCCU---------CGCGGAGGCCGGGGCGGCUAUGAUCCACCGCCCGCGCCAUCCGGCUACACCCCGGAAA .........(((((...((((((.(................---------.).)).)))).((((((..........))))))))))).(((((.......))))).. ( -39.13) >DroAna_CAF1 3296 108 - 1 GUAACGCCCGACGGCAAGGCCUCAACUCGCCCUCGACGCCCAACAGUGGUCGAAGUGGUCGUGCCGGUUACGAGCCACCGCCAGCCCCCUCCGGCUACACGCCAGAGU (((((((.((((.((..(((........))).(((((((......)).))))).)).)))).))..)))))(.((....)))......(((.(((.....))).))). ( -32.40) >consensus GCAAUUCCCGGCGCCAGGGCCCCACCUCCCCAUCUACACCC_________CGUAGAGGCCGGGGCGGCUACGAUCCACCGCCCGCGCCAUCCGGCUACACGCCGGAAA .........(((((...((((...................................)))).((((((..........))))))))))).((((((.....)))))).. (-30.04 = -30.82 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:03 2006