Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 370,365 – 370,485 |
Length | 120 |
Max. P | 0.991994 |
Location | 370,365 – 370,485 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.50 |
Mean single sequence MFE | -39.36 |
Consensus MFE | -36.98 |
Energy contribution | -37.02 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.76 |
Structure conservation index | 0.94 |
SVM decision value | 2.30 |
SVM RNA-class probability | 0.991994 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 370365 120 - 22407834 CAGAUCCAGUUCCUAUUCCUCUCCAGCGGCUGCCACACCGAUGUCCGUUCGAGGUGGCAGUGGCACUUAAUUAUUGAUAGCAUUACAAACGGGGUUCACUGGGUCACGAAGUGUACAUAU ..((((((((....(((((......((.((((((((..(((.......)))..)))))))).)).........(((.........)))..)))))..))))))))............... ( -40.10) >DroSec_CAF1 37935 120 - 1 CAGAUCCAGUUCCUAUUCCUCUCCAGCGGCUGCCACACCGAUGUCCGUUCGAGGUGGCAGUGGCACUUAAUUAUUGAUAGCAUUACAAACGGGGUUCACUGGGUCACGAAGUGUACACAU ..((((((((....(((((......((.((((((((..(((.......)))..)))))))).)).........(((.........)))..)))))..))))))))............... ( -40.10) >DroSim_CAF1 38587 120 - 1 CAGAUCCAGUUCCUAUUCCUCUCCAGCGGCUGCCACACCGAUGUCCGUUCGAGGUGGCAGUGGCACUUAAUUAUUGAUAGCAUUACAAACGGGGUUCACUGGGUCACGGAGUGUACACAU ..((((((((....(((((......((.((((((((..(((.......)))..)))))))).)).........(((.........)))..)))))..))))))))............... ( -40.10) >DroEre_CAF1 44454 120 - 1 AAGAUCCAGUUCCUAUUCCUCUCCAGCGGCUGCCACAUCGAUGUCCGUUCGAGGUGGCAGUGGCACUUAAUUAUUAAUAGCAUUACAAACGGGGUUCACUGGGUCACGAAGCGUACAUAU ..((((((((....(((((......((.((((((((.((((.......)))).)))))))).))...............(.....)....)))))..))))))))............... ( -39.50) >DroYak_CAF1 39036 120 - 1 AAGAUGCAGUUCCUAUUCCUCUCCAGCGGCUGCCACAUCGAUGUCCGUUCGAGGUGGCAGUGGCACUUAAUUAUUGAUAGCAUUACAAACGGGGUUCACUGGGUCACGAGGUGUACACUU ..(((.((((....(((((......((.((((((((.((((.......)))).)))))))).)).........(((.........)))..)))))..)))).)))...((((....)))) ( -37.00) >consensus CAGAUCCAGUUCCUAUUCCUCUCCAGCGGCUGCCACACCGAUGUCCGUUCGAGGUGGCAGUGGCACUUAAUUAUUGAUAGCAUUACAAACGGGGUUCACUGGGUCACGAAGUGUACACAU ..((((((((....(((((......((.((((((((..(((.......)))..)))))))).))..........((((...)))).....)))))..))))))))............... (-36.98 = -37.02 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:55 2006