Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,977,961 – 2,978,063 |
Length | 102 |
Max. P | 0.720485 |
Location | 2,977,961 – 2,978,063 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 77.71 |
Mean single sequence MFE | -37.77 |
Consensus MFE | -20.97 |
Energy contribution | -22.58 |
Covariance contribution | 1.61 |
Combinations/Pair | 1.36 |
Mean z-score | -1.81 |
Structure conservation index | 0.56 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.720485 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2977961 102 - 22407834 GCUUGGGAGGGGUCUGCUCCUCCAAGUCAUCCUCAUCGCCGUCGCGUAAUAACUUACGCUUGGCGAAUGCCUCUGUAGGCUUUAAAAUUGGACGAUUUGGAG .....(((((((....)))))))(((((.(((...((((((..((((((....)))))).))))))..((((....)))).........))).))))).... ( -40.30) >DroSec_CAF1 7939 102 - 1 GCUUGGGAGGGGUCUGCCCCUCCAAGUCAUCCACAUCGCCGUCGCGUAAUAACGCACGCUUUGCAAACGCCUCUUUAGGCUUUAAAAUCGGACGGUUGGGAG ((((((.(((((....)))))))))))..(((.((..((((((((((....)))).((.(((..(((.((((....))))))).))).))))))))))))). ( -42.70) >DroSim_CAF1 7928 102 - 1 GCUUGGGAGGGGUCUGCCCCUCCAAGUCAUCCUCAUCGCCGUCGCGUAAUAACGCACGCUUGGCGAACGCCUCUUUAGGCUUUAAAAUUGGACGGUUGGGAG ((((((.(((((....)))))))))))..(((.((..((((((((((....))))..(((((((....))).....))))..........))))))))))). ( -42.80) >DroEre_CAF1 8050 102 - 1 GCUUCGCAGGGCUUUGCUCCUCCAAGUCAUCCUCAUUUCCGUCGCGUAAUAGCUUGCGCUUGGCGAACGCUUCCUUUGGCGUCAGAAUGGGACGGUUUGGAG ........((((...))))((((((..(.(((.(((((.((((((((((....))))))..)))).(((((......)))))..)))))))).)..)))))) ( -35.60) >DroYak_CAF1 8072 102 - 1 GCUUGGCAGGGGUCUGCUCCUCUAAGUCAUCCUCAUCGCAGUCGCGUAAUAGCUUGCGCUUGGCGAACGUUUCCUUAGGCGUCAGAAUGGGACGUUUUGGAG ((((((.(((((....)))))))))))........((((....((((((....))))))...)))).....(((..(((((((.......))))))).))). ( -34.80) >DroPer_CAF1 8792 102 - 1 GCUUAACUGGUGACGACGCCUCCAAUUCAUCAUCCUCGCUCUCUGAAAUUUGUCUACGCUUUGACGCAGCUUCUGUGGGGGUCAGAAUUGGGCGUUUUGGGG .(((((..(....)((((((..((((((...((((((((...(((.....((((........))))))).....))))))))..))))))))))))))))). ( -30.40) >consensus GCUUGGCAGGGGUCUGCUCCUCCAAGUCAUCCUCAUCGCCGUCGCGUAAUAACUUACGCUUGGCGAACGCCUCUUUAGGCGUCAAAAUUGGACGGUUUGGAG ((((((.(((((....)))))))))))..(((..((((((...(((((......))))).........(((......))).........)).))))..))). (-20.97 = -22.58 + 1.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:59 2006