Locus 1079

Sequence ID 2L_DroMel_CAF1
Location 2,977,961 – 2,978,063
Length 102
Max. P 0.720485
window1748

overview

Window 8

Location 2,977,961 – 2,978,063
Length 102
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 77.71
Mean single sequence MFE -37.77
Consensus MFE -20.97
Energy contribution -22.58
Covariance contribution 1.61
Combinations/Pair 1.36
Mean z-score -1.81
Structure conservation index 0.56
SVM decision value 0.40
SVM RNA-class probability 0.720485
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2977961 102 - 22407834
GCUUGGGAGGGGUCUGCUCCUCCAAGUCAUCCUCAUCGCCGUCGCGUAAUAACUUACGCUUGGCGAAUGCCUCUGUAGGCUUUAAAAUUGGACGAUUUGGAG
.....(((((((....)))))))(((((.(((...((((((..((((((....)))))).))))))..((((....)))).........))).))))).... ( -40.30)
>DroSec_CAF1 7939 102 - 1
GCUUGGGAGGGGUCUGCCCCUCCAAGUCAUCCACAUCGCCGUCGCGUAAUAACGCACGCUUUGCAAACGCCUCUUUAGGCUUUAAAAUCGGACGGUUGGGAG
((((((.(((((....)))))))))))..(((.((..((((((((((....)))).((.(((..(((.((((....))))))).))).))))))))))))). ( -42.70)
>DroSim_CAF1 7928 102 - 1
GCUUGGGAGGGGUCUGCCCCUCCAAGUCAUCCUCAUCGCCGUCGCGUAAUAACGCACGCUUGGCGAACGCCUCUUUAGGCUUUAAAAUUGGACGGUUGGGAG
((((((.(((((....)))))))))))..(((.((..((((((((((....))))..(((((((....))).....))))..........))))))))))). ( -42.80)
>DroEre_CAF1 8050 102 - 1
GCUUCGCAGGGCUUUGCUCCUCCAAGUCAUCCUCAUUUCCGUCGCGUAAUAGCUUGCGCUUGGCGAACGCUUCCUUUGGCGUCAGAAUGGGACGGUUUGGAG
........((((...))))((((((..(.(((.(((((.((((((((((....))))))..)))).(((((......)))))..)))))))).)..)))))) ( -35.60)
>DroYak_CAF1 8072 102 - 1
GCUUGGCAGGGGUCUGCUCCUCUAAGUCAUCCUCAUCGCAGUCGCGUAAUAGCUUGCGCUUGGCGAACGUUUCCUUAGGCGUCAGAAUGGGACGUUUUGGAG
((((((.(((((....)))))))))))........((((....((((((....))))))...)))).....(((..(((((((.......))))))).))). ( -34.80)
>DroPer_CAF1 8792 102 - 1
GCUUAACUGGUGACGACGCCUCCAAUUCAUCAUCCUCGCUCUCUGAAAUUUGUCUACGCUUUGACGCAGCUUCUGUGGGGGUCAGAAUUGGGCGUUUUGGGG
.(((((..(....)((((((..((((((...((((((((...(((.....((((........))))))).....))))))))..))))))))))))))))). ( -30.40)
>consensus
GCUUGGCAGGGGUCUGCUCCUCCAAGUCAUCCUCAUCGCCGUCGCGUAAUAACUUACGCUUGGCGAACGCCUCUUUAGGCGUCAAAAUUGGACGGUUUGGAG
((((((.(((((....)))))))))))..(((..((((((...(((((......))))).........(((......))).........)).))))..))). (-20.97 = -22.58 +   1.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:59 2006