Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,976,124 – 2,976,222 |
Length | 98 |
Max. P | 0.999334 |
Location | 2,976,124 – 2,976,222 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.46 |
Mean single sequence MFE | -42.22 |
Consensus MFE | -24.68 |
Energy contribution | -26.48 |
Covariance contribution | 1.80 |
Combinations/Pair | 1.24 |
Mean z-score | -2.41 |
Structure conservation index | 0.58 |
SVM decision value | 1.75 |
SVM RNA-class probability | 0.975274 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2976124 98 + 22407834 CCGACGAGUUAUCAUCAUUCGCACGCUUGCGAACGCGAUCAUCCGAAAUCGGCUGCUCCGGACGCCUGCGUCCGCGGUCAGCCGAAACUGACUUGUCG---------------------- .((((((((((......((((((....))))))...............(((((((((.((((((....)))))).)).)))))))...))))))))))---------------------- ( -44.70) >DroSec_CAF1 6106 98 + 1 CCGACGCGCUAUCAUCAUUCGCACGCUUGCGAACGCGAUCCUCCGAAAUCGUAUGCUCCGGACGCCUUCGUCCGCGGUCAGCCGAAACUGACUUGUCG---------------------- .((((((((........((((((....)))))).(((((........)))))..))...(((((....)))))))((((((......)))))).))))---------------------- ( -32.00) >DroSim_CAF1 6101 98 + 1 CCGACGCGUUAUCAUCAUUCGCACGCUUGCGAACGCGAUCCUCCGAAAUCGUAUGCUCCGGACGCCUGCGUCCGCGGUCAGCCGAAACUGACUUGUCG---------------------- .((((((((........((((((....)))))).(((((........)))))))))..((((((....)))))).((((((......)))))).))))---------------------- ( -33.20) >DroEre_CAF1 6252 98 + 1 CCGACAAGUUUUCUUCGUUCGGACGCUUGCGAACACGAUCACCCGGAACCGGCAGCUCCGGACGCCUGCGUCCGCGAUCAGUCGAAACUGACUUGUCG---------------------- .(((((((......(((..(((((((..(((....((......))...((((.....)))).)))..))))))))))(((((....))))))))))))---------------------- ( -39.10) >DroYak_CAF1 6215 120 + 1 CCGACGAGUUGUCUUCAUUCGGACGCUUGCGGCCGCGUUCAUCCGGAACUGGCUGCUCCGGACGCUUGCGGCCGCGUUCAUCCGGAACUGGCUGCUCCGGACGCCUGCGUCCGCGGUUAG (((..((((.(((....((((((.(..((((((((((..(.((((((.(.....).)))))).)..))))))))))..).))))))...))).))))((((((....))))))))).... ( -62.10) >consensus CCGACGAGUUAUCAUCAUUCGCACGCUUGCGAACGCGAUCAUCCGAAAUCGGCUGCUCCGGACGCCUGCGUCCGCGGUCAGCCGAAACUGACUUGUCG______________________ .((((((((((......((((...(.((((....)))).)...)))).((((.((.((((((((....)))))).)).)).))))...))))))))))...................... (-24.68 = -26.48 + 1.80)
Location | 2,976,124 – 2,976,222 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.46 |
Mean single sequence MFE | -49.42 |
Consensus MFE | -34.12 |
Energy contribution | -34.40 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.26 |
Mean z-score | -3.35 |
Structure conservation index | 0.69 |
SVM decision value | 3.52 |
SVM RNA-class probability | 0.999334 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2976124 98 - 22407834 ----------------------CGACAAGUCAGUUUCGGCUGACCGCGGACGCAGGCGUCCGGAGCAGCCGAUUUCGGAUGAUCGCGUUCGCAAGCGUGCGAAUGAUGAUAACUCGUCGG ----------------------((((..(((....(((((((..(.((((((....)))))))..))))))).....))).((((((((((((....)))))))).)))).....)))). ( -46.00) >DroSec_CAF1 6106 98 - 1 ----------------------CGACAAGUCAGUUUCGGCUGACCGCGGACGAAGGCGUCCGGAGCAUACGAUUUCGGAGGAUCGCGUUCGCAAGCGUGCGAAUGAUGAUAGCGCGUCGG ----------------------((((..((((((....)))))).(((((((....)))))...((...((....))....((((((((((((....)))))))).)))).)))))))). ( -40.00) >DroSim_CAF1 6101 98 - 1 ----------------------CGACAAGUCAGUUUCGGCUGACCGCGGACGCAGGCGUCCGGAGCAUACGAUUUCGGAGGAUCGCGUUCGCAAGCGUGCGAAUGAUGAUAACGCGUCGG ----------------------((((..((((((....)))))).((((((((...(.((((((((....).))))))).)...))))))))..((((.............)))))))). ( -41.92) >DroEre_CAF1 6252 98 - 1 ----------------------CGACAAGUCAGUUUCGACUGAUCGCGGACGCAGGCGUCCGGAGCUGCCGGUUCCGGGUGAUCGUGUUCGCAAGCGUCCGAACGAAGAAAACUUGUCGG ----------------------((((((((((((....)))))((((((((((......(((((((.....)))))))((((......))))..)))))))..)))......))))))). ( -45.70) >DroYak_CAF1 6215 120 - 1 CUAACCGCGGACGCAGGCGUCCGGAGCAGCCAGUUCCGGAUGAACGCGGCCGCAAGCGUCCGGAGCAGCCAGUUCCGGAUGAACGCGGCCGCAAGCGUCCGAAUGAAGACAACUCGUCGG ....((.(((((((...((((((((((.....))))))))))...((((((((...((((((((((.....))))))))))...))))))))..)))))))......(((.....))))) ( -73.50) >consensus ______________________CGACAAGUCAGUUUCGGCUGACCGCGGACGCAGGCGUCCGGAGCAGCCGAUUUCGGAUGAUCGCGUUCGCAAGCGUGCGAAUGAUGAUAACUCGUCGG ......................((((..((((((....)))))).((((((((...(((((((((.......)))))))))...)))))))).......................)))). (-34.12 = -34.40 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:56 2006