Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,963,366 – 2,963,475 |
Length | 109 |
Max. P | 0.730127 |
Location | 2,963,366 – 2,963,475 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.47 |
Mean single sequence MFE | -34.12 |
Consensus MFE | -25.78 |
Energy contribution | -26.42 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.09 |
Mean z-score | -1.81 |
Structure conservation index | 0.76 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.730127 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2963366 109 + 22407834 ACAAGAACAAGCAAACGUAAUUAUUAACCAAGUUGGCUGCUGUUGUCAAUGCCAAUGCGGCGGCGGCAGCUCUGGCGGCCAAUGGUCUAGUCCUCCAUAAUCAUCACCA----------- ......................((((((((..(((((((((((((((..((((.....))))..))))))...))))))))))))).))))..................----------- ( -31.10) >DroVir_CAF1 22028 106 + 1 ACAAAAAUAAGCAAACGUAAUUAUUAACCAAGUUGGCUGCUGUUGUCAAUGCCAAUGCGGCGGCAGCGGCGCUGGCUGCCAAUAGUUUGGUGCUCA---AUCACAAUCA----------- .........(((..................(((..((.(((((((((...(((.....))))))))))))))..)))(((((....))))))))..---..........----------- ( -33.30) >DroPse_CAF1 122785 120 + 1 ACAAGAACAAGCAAACGUAAUUACUAUCCAAGUUGGCUGCUGUUGUCAAUGCCAAUGCGGCGGCGGCGGCCUUGGCGGCCAAUGGUCUGGUGCUCCACAACCAUCGUCAGAACAAUCAGA ...............................((((((((((((((((.((....))..)))))))))))))((((((....(((((.(((....)))..))))))))))))))....... ( -34.90) >DroWil_CAF1 25392 107 + 1 AUAAAAAUAAGCAAACGUAAUUAUUAACCAAGUUGGCUGCUGUUGUCAAUGCCAAUGCAGCGGCGGCGGCUUUGGCGGCCAAUGGUUUGGUGAUGCAUCAACAACA--A----------- ................(((.((((((((((..((((((((((..(((..((((........))))..)))..))))))))))))).))))))))))..........--.----------- ( -34.10) >DroMoj_CAF1 22600 106 + 1 ACAAAAAUAAGCAAACGUAAUUAUUAACCAAGUUGGCUGCUGUUGUCAAUGCCAAUGCGGCGGCAGCGGCGCUAGCUGCCAAUCGUUUGGUGCUUA---AUCAAAGCCA----------- .......(((((..................(((((((.(((((((((...(((.....)))))))))))))))))))(((((....))))))))))---..........----------- ( -36.40) >DroPer_CAF1 124487 115 + 1 ACAAGAACAAGCAAACGUAAUUACUAUCCAAGUUGGCUGCUGUUGUCAAUGCCAAUGCGGCGGCGGCGGCCUUGGCGGCCAAUGGUCUGGUGCUCCACAACCAUCGUCAGAACAA----- ...............................((((((((((((((((.((....))..)))))))))))))((((((....(((((.(((....)))..))))))))))))))..----- ( -34.90) >consensus ACAAAAACAAGCAAACGUAAUUAUUAACCAAGUUGGCUGCUGUUGUCAAUGCCAAUGCGGCGGCGGCGGCCCUGGCGGCCAAUGGUCUGGUGCUCCA_AAUCAUCAUCA___________ ..........................((((.(((((((((((..(((..((((........))))..)))..)))))))))))....))))............................. (-25.78 = -26.42 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:44 2006