Locus 1072

Sequence ID 2L_DroMel_CAF1
Location 2,962,560 – 2,962,669
Length 109
Max. P 0.661209
window1730

overview

Window 0

Location 2,962,560 – 2,962,669
Length 109
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 76.25
Mean single sequence MFE -32.68
Consensus MFE -22.81
Energy contribution -22.87
Covariance contribution 0.06
Combinations/Pair 1.27
Mean z-score -1.09
Structure conservation index 0.70
SVM decision value 0.27
SVM RNA-class probability 0.661209
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2962560 109 + 22407834
-----AUGAUGA-CAUGCGACUUG---AUUUCAGGUCUCUCCAAGGGCGUUGGCUUUAUACGCUUCGAUCAGCGAUUUGAGGCCGACCGGGCCAUUAAAGAGCUGAACGGCACCACUC
-----.......-..(((((((((---....)))))).......((((((.........))))))((.(((((..(((((((((.....)))).)))))..))))).)))))...... ( -36.10)
>DroVir_CAF1 20821 114 + 1
---GUAUUCUGUUUUUCU-UAUACUUUCGCCUAGGUCUCUCCAAGGGCGUCGGCUUCAUACGCUUCGAUCAGCGCUUUGAGGCAGAUCGCGCCAUCAAGGAGCUAAACGGCACCACAC
---((((...(.....).-.))))....(((..((.((((.....(((((..((((((..((((......))))...)))))).....))))).....))))))....)))....... ( -30.50)
>DroGri_CAF1 17841 113 + 1
UUGC-AAUUUUCUUCUGU-UCAUG---CGUUUAGGUCUCUCCAAGGGCGUUGGCUUCAUACGCUUCGAUCAGCGCUUUGAGGCUGAUCGCGCCAUCAAGGAGCUAAACGGUACCACAC
....-.............-.....---(((((((.((.((....((((((..((((((..((((......))))...))))))..).))).))....)))).)))))))......... ( -34.70)
>DroWil_CAF1 24420 108 + 1
-----AUUAUGU-UGUGCUAA-UU---CUUGUAGGUCUCUCCAAAGGCGUUGGCUUUAUACGUUUCGAUCAGCGUUUCGAGGCUGAUCGUGCCAUUAAGGAACUAAAUGGUACAACUC
-----...((((-...(((((-(.---(((...((.....))..))).)))))).....))))...(((((((........)))))))((((((((.((...)).))))))))..... ( -31.20)
>DroMoj_CAF1 20578 117 + 1
UAGCUAAUUUGUUUAUAU-UUAUGUUUCGCUUAGGUCUCUCCAAGGGCGUUGGCUUUAUACGCUUCGAUCAGCGCUUCGAGGCUGAUCGCGCCAUCAAGGAGCUCAACGGCACCACAC
..(((.............-.........((((.((.....))..))))(((((((((....((..((((((((........)))))))).))......))))).)))))))....... ( -30.20)
>DroAna_CAF1 15913 105 + 1
--------ACGA-UAUGUUGC-UC---CUUUCAGGUCUCUCCAAGGGCGUUGGUUUCAUACGCUUCGAUCAGCGCUUUGAAGCCGAUCGUGCAAUCAAGGAGCUAAAUGGUACCACAC
--------....-(((...((-((---(((...((.....))..(.((((((((((((..((((......))))...))))))))).))).)....)))))))...)))......... ( -33.40)
>consensus
_____AUUAUGU_UAUGU_UC_UG___CGUUUAGGUCUCUCCAAGGGCGUUGGCUUCAUACGCUUCGAUCAGCGCUUUGAGGCUGAUCGCGCCAUCAAGGAGCUAAACGGCACCACAC
.................................(((((((((...(((((((((((((..((((......))))...))))))))))...))).....))))......)).))).... (-22.81 = -22.87 +   0.06) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:43 2006