Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,962,560 – 2,962,669 |
Length | 109 |
Max. P | 0.661209 |
Location | 2,962,560 – 2,962,669 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 76.25 |
Mean single sequence MFE | -32.68 |
Consensus MFE | -22.81 |
Energy contribution | -22.87 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.27 |
Mean z-score | -1.09 |
Structure conservation index | 0.70 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.661209 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2962560 109 + 22407834 -----AUGAUGA-CAUGCGACUUG---AUUUCAGGUCUCUCCAAGGGCGUUGGCUUUAUACGCUUCGAUCAGCGAUUUGAGGCCGACCGGGCCAUUAAAGAGCUGAACGGCACCACUC -----.......-..(((((((((---....)))))).......((((((.........))))))((.(((((..(((((((((.....)))).)))))..))))).)))))...... ( -36.10) >DroVir_CAF1 20821 114 + 1 ---GUAUUCUGUUUUUCU-UAUACUUUCGCCUAGGUCUCUCCAAGGGCGUCGGCUUCAUACGCUUCGAUCAGCGCUUUGAGGCAGAUCGCGCCAUCAAGGAGCUAAACGGCACCACAC ---((((...(.....).-.))))....(((..((.((((.....(((((..((((((..((((......))))...)))))).....))))).....))))))....)))....... ( -30.50) >DroGri_CAF1 17841 113 + 1 UUGC-AAUUUUCUUCUGU-UCAUG---CGUUUAGGUCUCUCCAAGGGCGUUGGCUUCAUACGCUUCGAUCAGCGCUUUGAGGCUGAUCGCGCCAUCAAGGAGCUAAACGGUACCACAC ....-.............-.....---(((((((.((.((....((((((..((((((..((((......))))...))))))..).))).))....)))).)))))))......... ( -34.70) >DroWil_CAF1 24420 108 + 1 -----AUUAUGU-UGUGCUAA-UU---CUUGUAGGUCUCUCCAAAGGCGUUGGCUUUAUACGUUUCGAUCAGCGUUUCGAGGCUGAUCGUGCCAUUAAGGAACUAAAUGGUACAACUC -----...((((-...(((((-(.---(((...((.....))..))).)))))).....))))...(((((((........)))))))((((((((.((...)).))))))))..... ( -31.20) >DroMoj_CAF1 20578 117 + 1 UAGCUAAUUUGUUUAUAU-UUAUGUUUCGCUUAGGUCUCUCCAAGGGCGUUGGCUUUAUACGCUUCGAUCAGCGCUUCGAGGCUGAUCGCGCCAUCAAGGAGCUCAACGGCACCACAC ..(((.............-.........((((.((.....))..))))(((((((((....((..((((((((........)))))))).))......))))).)))))))....... ( -30.20) >DroAna_CAF1 15913 105 + 1 --------ACGA-UAUGUUGC-UC---CUUUCAGGUCUCUCCAAGGGCGUUGGUUUCAUACGCUUCGAUCAGCGCUUUGAAGCCGAUCGUGCAAUCAAGGAGCUAAAUGGUACCACAC --------....-(((...((-((---(((...((.....))..(.((((((((((((..((((......))))...))))))))).))).)....)))))))...)))......... ( -33.40) >consensus _____AUUAUGU_UAUGU_UC_UG___CGUUUAGGUCUCUCCAAGGGCGUUGGCUUCAUACGCUUCGAUCAGCGCUUUGAGGCUGAUCGCGCCAUCAAGGAGCUAAACGGCACCACAC .................................(((((((((...(((((((((((((..((((......))))...))))))))))...))).....))))......)).))).... (-22.81 = -22.87 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:43 2006