Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 368,811 – 368,916 |
Length | 105 |
Max. P | 0.840802 |
Location | 368,811 – 368,916 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.08 |
Mean single sequence MFE | -29.24 |
Consensus MFE | -14.12 |
Energy contribution | -14.48 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.24 |
Mean z-score | -2.00 |
Structure conservation index | 0.48 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.840802 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 368811 105 + 22407834 AAUAAAUAACUUCAAACUCCACACCAACACUAACAAGAGGCAACUCUCU---UCG--AAAUGGAGCUCUUCGAUUGGUUGACUUCGUCGAAG--GGGCGUUGCCCAACGA--------AA ....................................(.(((((((((((---(((--(...((((.((...........)))))).))))))--))).))))))).....--------.. ( -25.70) >DroSec_CAF1 36365 105 + 1 AAUGAACAACCUCAAACUCCACACCAACACCAACAAGAGGCAACUCUCU---UCG--AAAUGGAGCUCUUCGAUUGGUUGGCUUCGUCGAAG--GGGCGUUGCCCAUCGA--------AA ..(((......)))......................(.(((((((((((---(((--(...((((((..((....))..)))))).))))))--))).))))))).....--------.. ( -30.80) >DroEre_CAF1 42927 104 + 1 AAUGAACAACUUCCCACUCCACACCAACACCGAGAAGAGGCAACUCUC----UCG--AAAUGGAGCCCUCCGAUUGGCUGACUCCGUCGAAG--GGGCGUUGCCCAUCGG--------AA ................(((((.........(((((.(((....)))))----)))--...)))))...((((((.(((...((((......)--)))....))).)))))--------). ( -35.10) >DroYak_CAF1 37504 109 + 1 AAUGAACAACUUCCCACUCCACACCAAC------AAGAGGUAACUCUCUCC-UCG--AAAUGGAGCUCUCCGAUUGGCCGACUCCGUCGAAG--GGGCGUUGCCCAUCGAAAGAGCGAAA ..........(((..........(((..------..((((.........))-)).--...))).(((((.((((.(((((.((((......)--)))))..))).))))..)))))))). ( -31.40) >DroAna_CAF1 48032 100 + 1 AAUGAACAACUUC-----CCACACCAGCCC-------AGUCAACUCUCUUUUUUGAAGAACGAAGCUCUGCCAUUGGCAGAUUUCCACCAAGAAGGGAGUGGCCUAUCGA--------AA .............-----............-------.((((.(((.((((((((......((((.((((((...))))))))))...))))))))))))))).......--------.. ( -23.20) >consensus AAUGAACAACUUCAAACUCCACACCAACAC__A_AAGAGGCAACUCUCU___UCG__AAAUGGAGCUCUCCGAUUGGCUGACUUCGUCGAAG__GGGCGUUGCCCAUCGA________AA ......................................((((((.(((....(((....((((((.((..(.....)..)))))))))))....))).))))))................ (-14.12 = -14.48 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:54 2006