Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,955,806 – 2,955,899 |
Length | 93 |
Max. P | 0.992730 |
Location | 2,955,806 – 2,955,899 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 95.16 |
Mean single sequence MFE | -29.22 |
Consensus MFE | -27.22 |
Energy contribution | -27.26 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.13 |
Mean z-score | -1.74 |
Structure conservation index | 0.93 |
SVM decision value | 2.35 |
SVM RNA-class probability | 0.992730 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2955806 93 + 22407834 AUAUAAAUAAGGAGAGCGAGGUAUUGUUGCAUACUUGUAGGCAGCGGGAUGGGGGUGGAGCUGUUCUGUUCCAUCCGCUCGCAAAGUUCAAUG ...............(((((...(((((((.((....)).))))))).....(((((((((......))))))))).)))))........... ( -31.70) >DroSec_CAF1 17034 93 + 1 AUAUAAAUAAGGAGAGCGAGGUAUUGUUGCAUACUUGUGGGCAGCGGGAUGGGGGUGGAGCUGUUCUGUUCCAUCCGCUCGCAAAGUUCAAUG ...............(((((...(((((((...(....).))))))).....(((((((((......))))))))).)))))........... ( -31.50) >DroSim_CAF1 8558 93 + 1 AUAUAAAUAAGGAGAGCGAGGUAUUGUUGCAUACUUGUGGGCAGCGGGAUAGGGGUGGAGCUGUUCUGUUCCAUCCGCUCGCAAAGUUCAAUG ...............(((((...(((((((...(....).))))))).....(((((((((......))))))))).)))))........... ( -31.50) >DroEre_CAF1 8196 93 + 1 AUAUAAAUAAGGAGAGCGAGGGAUUGUUGCAUACUUGUGGGCGGCGGGGUGGGGGUGAAGCUGUUCUGUUCCAUCCGCUCGCAAAGUUCAAUG ...............(((((....((((((...(....).))))))((((((((..(((....)))..)))))))).)))))........... ( -26.40) >DroYak_CAF1 8538 93 + 1 AUAUAAAUAAGGAGAGCGAGGGAUUGUUGCAUACUUUAGGGCGGUGGGGUGGGGGUGUAGCUGUUCUGUUCCAUCCGCUCGCAAAGUUCAAUG .............((((((.......))))..(((((.(((((((((((..((((.....))..))..))))).))))))..))))))).... ( -25.00) >consensus AUAUAAAUAAGGAGAGCGAGGUAUUGUUGCAUACUUGUGGGCAGCGGGAUGGGGGUGGAGCUGUUCUGUUCCAUCCGCUCGCAAAGUUCAAUG ...............(((((...(((((((.((....)).))))))).....(((((((((......))))))))).)))))........... (-27.22 = -27.26 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:40 2006