Locus 1068

Sequence ID 2L_DroMel_CAF1
Location 2,951,938 – 2,952,051
Length 113
Max. P 0.678437
window1726

overview

Window 6

Location 2,951,938 – 2,952,051
Length 113
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 80.29
Mean single sequence MFE -30.62
Consensus MFE -20.39
Energy contribution -21.37
Covariance contribution 0.97
Combinations/Pair 1.11
Mean z-score -1.53
Structure conservation index 0.67
SVM decision value 0.30
SVM RNA-class probability 0.678437
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2951938 113 + 22407834
CAAGCAGAAUGAGUUUCUGAGCUAUCUAAAUAGCGCUCACGAGUUGUGGGAUCAAGCCGAUCGAUUGGUGCGCACAGGCAAUCAUAUAGGUGAGUUGUUUAGGCGUCCGCCUA
....(((((.....))))).(((((....)))))((.(((.((((((.((......)).).))))).))).))..((((((((((....)))).))))))((((....)))). ( -33.60)
>DroVir_CAF1 5294 109 + 1
CAAGCAGAAUGAGUAUCUCACCUAUGUGAACAGCGCUCAUGAGCUGUGGGAUCAAGCCGAUCGAUUGGUGCGCACCGGCAAUCAUAUAGGUAAUCUU--CAUAUCAA--UCUA
.....(((.(((.......(((((((((((((((........)))))..((((.....))))(.(((((....))))))..))))))))))......--....))).--))). ( -29.53)
>DroPse_CAF1 104271 106 + 1
GAAGCAGAAUGAGUAUCUGACCUAUGUGAAUAGUGCUCACGAGUUGUGGGAUCAAGCCGAUCGACUGGUGCGCACAGGCAAUCAUAUAGGUGAGUGGAUAAGA-------GGA
................((.((((((((((...((((.(((.((((((.((......)).).))))).))).))))......)))))))))).)).........-------... ( -34.10)
>DroWil_CAF1 4333 96 + 1
CAAGCAGAACGAGUAUCUAACCUAUGUGAAUAGUGCUCAUGAGUUGUGGGAUCAAGCCGAUCGAUUAGUUCGCACCGGCAAUCAUCUAGGUAAGCA-----------------
...(((((.......))).(((((.((((......(((((.....))))).....((((..(((.....)))...))))..)))).)))))..)).----------------- ( -24.10)
>DroMoj_CAF1 2477 109 + 1
CAAGCAGAAUGAGUAUCUCACCUAUGUAAACAGCGCUCACGAGCUGUGGGAUCAAGCCGAUCGUUUGGUGCGCAACGGCAAUCAUAUAGGUAAUGUA--CAGCUAAA--ACUA
..(((.....(((...)))((((((((..(((((........)))))........((((..(((.....)))...))))....))))))))......--..)))...--.... ( -28.30)
>DroPer_CAF1 104494 106 + 1
GAAGCAGAAUGAGUAUCUGACCUAUGUGAAUAGUGCUCACGAGUUGUGGGAUCAAGCCGAUCGACUGGUGCGCACAGGCAAUCAUAUAGGUGAGUGGAUAAGA-------GGA
................((.((((((((((...((((.(((.((((((.((......)).).))))).))).))))......)))))))))).)).........-------... ( -34.10)
>consensus
CAAGCAGAAUGAGUAUCUGACCUAUGUGAAUAGCGCUCACGAGUUGUGGGAUCAAGCCGAUCGAUUGGUGCGCACAGGCAAUCAUAUAGGUAAGUUG__AAGA_______CUA
................((.((((((((((...((((.(((.((((((.((......)).).))))).))).))....))..)))))))))).))................... (-20.39 = -21.37 +   0.97)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:39 2006