Locus 1067

Sequence ID 2L_DroMel_CAF1
Location 2,948,595 – 2,948,697
Length 102
Max. P 0.802539
window1725

overview

Window 5

Location 2,948,595 – 2,948,697
Length 102
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 81.18
Mean single sequence MFE -40.99
Consensus MFE -29.76
Energy contribution -31.65
Covariance contribution 1.89
Combinations/Pair 1.28
Mean z-score -1.82
Structure conservation index 0.73
SVM decision value 0.62
SVM RNA-class probability 0.802539
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2948595 102 - 22407834
GCCCGGCGAGACGCUUUCGGAAUUUGUCUGAUUUGCGGGCUUGUGGAAAAAGCGACUCAGAUUCCACUUGUUGCUUUCCGUUGGCGAGGGGGUCUUGUUCGA
...(((((((((.((((((..((..(((((.....)))))..))((((..((((((..((......)).)))))))))).....)))))).)))))).))). ( -35.00)
>DroPse_CAF1 100530 102 - 1
CCCGGGCGAGACGCUCUCAGAGCUGGUCUGGUUGGCCGGCUUCGGAAAGAAGCGACUCAGCGUCCACUUGUUGCUCUCCGUGGGCGAGGGCGUCUUGUUCGA
..((((((((((((((((...((((((((((....)))(((((.....)))))))).))))((((((............)))))))))))))))))))))). ( -56.60)
>DroSim_CAF1 1016 102 - 1
GCCGGGCGAGACGCUUUCGGAAUUUGUCUGAUUUGCGGGCUUGUGGAAAAAGCGACUCAAAUUCCACUUGUUGCUUUCCGUUGGCGAGGGCGUCUUGUUCUU
...((((((((((((((((..((..(((((.....)))))..))((((..((((((.............)))))))))).....)))))))))))))))).. ( -41.02)
>DroWil_CAF1 672 102 - 1
ACCGGGCGAUACACUCUCGGAGCUCGUUUGACUGGUGGGUUUGUGAAAGAAGCGACUAAGAUUCCAUUUAUUGCUAUCGGUUGGCGAUGGCGUUUUAUUUGA
.(((((.(.....).))))).(((((.(..((((((((....(((((.(((.(......).)))..)))))..))))))))..))))..))........... ( -24.20)
>DroAna_CAF1 1017 102 - 1
GCCGGGCGUAGCGCUCUCGGUGUUUGUCUGGUUGGCGGGCUUCGGAAAGAACCUACUCAGUGUCCACUUGUUGCUCUCUGUAGGCGACGGCGUCUUGUUCGA
..((((((..(((((.(((..(((((((.....)))))))...........(((((..((.((.........)).))..)))))))).)))))..)))))). ( -32.50)
>DroPer_CAF1 100752 102 - 1
CCCGGGCGAGACGCUCUCAGAGCUGGUCUGGUUGGCCGGCUUCGGAAAGAAGCGACUCAGCGUCCACUUGUUGCUCUCCGUGGGCGAGGGCGUCUUGUUCGA
..((((((((((((((((...((((((((((....)))(((((.....)))))))).))))((((((............)))))))))))))))))))))). ( -56.60)
>consensus
GCCGGGCGAGACGCUCUCGGAGCUUGUCUGAUUGGCGGGCUUCGGAAAGAAGCGACUCAGAGUCCACUUGUUGCUCUCCGUUGGCGAGGGCGUCUUGUUCGA
..((((((((((((((((((((((((((.....)))))))))........((((((.............)))))).........))))))))))))))))). (-29.76 = -31.65 +   1.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:37 2006