Locus 1066

Sequence ID 2L_DroMel_CAF1
Location 2,947,894 – 2,948,008
Length 114
Max. P 0.671141
window1724

overview

Window 4

Location 2,947,894 – 2,948,008
Length 114
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 78.89
Mean single sequence MFE -53.40
Consensus MFE -29.15
Energy contribution -30.35
Covariance contribution 1.20
Combinations/Pair 1.21
Mean z-score -1.91
Structure conservation index 0.55
SVM decision value 0.29
SVM RNA-class probability 0.671141
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2947894 114 - 22407834
AGUGAUUCUUUUCCGUUUUGAGCGGCUUGACCGGUCCCGGCGACGUGACUCCGGAAGCUGCUUUGGGCAUAGUGGGUGGCAGUUGGUGCAGGGGUGCCAGA-GCCUCUCCCGCUA
..............(((..(((((((((..((((((.((....)).))..)))))))))))))..))).(((((((.(((..((((..(....)..)))).-)))...))))))) ( -49.20)
>DroPse_CAF1 99789 106 - 1
UAUGGUUCUUCUCCGUCUUGAGCGGCUUGGCCGCUGCUGUGGGGGAGAGAGCGGCCGCAGCCUUGGGCGGCGUCGGCGGCAGUUGUUGCAGCGGCGCCACGGGGCU---------
....(((((.((((.((..(((((((...)))))).)...)).)))))))))......(((((((((((.(((..(((((....))))).))).)))).)))))))--------- ( -54.60)
>DroSim_CAF1 320 114 - 1
AGUGAUUCUUUUCCGUUUUGAGCGGCUUGACCGGUCCCGGCGACGUGACUCCGGAAGCUGCUUUGGGCGGAGUGGGUGGCAGUUGGUGCAGGGGUGCCAGA-GCCUCUCCCGCUA
...........((((((..(((((((((..((((((.((....)).))..)))))))))))))..))))))(((((.(((..((((..(....)..)))).-)))...))))).. ( -54.00)
>DroEre_CAF1 287 114 - 1
AGUGAUUCUUUUCCGUUUUGAGCGGCUUGCCCGGGCCCGGCGACGUGACUCCGGAAGCUGCUUUGGGCGGAGUGGGUGGCAGUUGGUGCAGUGGUGCCAGA-GCCUCUCCCGCCA
...........((((((..(((((((((..((((((.((....)).).).)))))))))))))..))))))(((((.(((..((((..(....)..)))).-)))...))))).. ( -53.60)
>DroYak_CAF1 560 114 - 1
AGUGAUUCUUUUCCGUUUUCAGCGGCUUGGUCGGUCCCGGCGACGUGACUCCGGAUGCUGCUUUGGGCGGAGUGGGAGGCAGUUGGUGCAGGGGUGCCAGA-GGCUCUCCCGCUA
...........(((((((..((((((.(((..((((.((....)).)))))))...))))))..)))))))(((((((((..((((..(....)..)))).-.)).))))))).. ( -54.40)
>DroPer_CAF1 100011 106 - 1
UAUGGUUCUUCUCCGUCUUGAGCGGCUUGGCCGCUGCUGUGGGGGAGAGAGCGGCCGCAGCCUUGGGCGGCGUCGGCGGCAGUUGUUGCAGCGGCGCCACGGGGCU---------
....(((((.((((.((..(((((((...)))))).)...)).)))))))))......(((((((((((.(((..(((((....))))).))).)))).)))))))--------- ( -54.60)
>consensus
AGUGAUUCUUUUCCGUUUUGAGCGGCUUGGCCGGUCCCGGCGACGUGACUCCGGAAGCUGCUUUGGGCGGAGUGGGUGGCAGUUGGUGCAGGGGUGCCAGA_GCCUCUCCCGCUA
.((.((((..((((((((.(((((((....((((..(((....)).)...))))..))))))).)))))))).)))).))...((((((....))))))................ (-29.15 = -30.35 +   1.20) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:36 2006