Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,947,894 – 2,948,008 |
Length | 114 |
Max. P | 0.671141 |
Location | 2,947,894 – 2,948,008 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 78.89 |
Mean single sequence MFE | -53.40 |
Consensus MFE | -29.15 |
Energy contribution | -30.35 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.21 |
Mean z-score | -1.91 |
Structure conservation index | 0.55 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.671141 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2947894 114 - 22407834 AGUGAUUCUUUUCCGUUUUGAGCGGCUUGACCGGUCCCGGCGACGUGACUCCGGAAGCUGCUUUGGGCAUAGUGGGUGGCAGUUGGUGCAGGGGUGCCAGA-GCCUCUCCCGCUA ..............(((..(((((((((..((((((.((....)).))..)))))))))))))..))).(((((((.(((..((((..(....)..)))).-)))...))))))) ( -49.20) >DroPse_CAF1 99789 106 - 1 UAUGGUUCUUCUCCGUCUUGAGCGGCUUGGCCGCUGCUGUGGGGGAGAGAGCGGCCGCAGCCUUGGGCGGCGUCGGCGGCAGUUGUUGCAGCGGCGCCACGGGGCU--------- ....(((((.((((.((..(((((((...)))))).)...)).)))))))))......(((((((((((.(((..(((((....))))).))).)))).)))))))--------- ( -54.60) >DroSim_CAF1 320 114 - 1 AGUGAUUCUUUUCCGUUUUGAGCGGCUUGACCGGUCCCGGCGACGUGACUCCGGAAGCUGCUUUGGGCGGAGUGGGUGGCAGUUGGUGCAGGGGUGCCAGA-GCCUCUCCCGCUA ...........((((((..(((((((((..((((((.((....)).))..)))))))))))))..))))))(((((.(((..((((..(....)..)))).-)))...))))).. ( -54.00) >DroEre_CAF1 287 114 - 1 AGUGAUUCUUUUCCGUUUUGAGCGGCUUGCCCGGGCCCGGCGACGUGACUCCGGAAGCUGCUUUGGGCGGAGUGGGUGGCAGUUGGUGCAGUGGUGCCAGA-GCCUCUCCCGCCA ...........((((((..(((((((((..((((((.((....)).).).)))))))))))))..))))))(((((.(((..((((..(....)..)))).-)))...))))).. ( -53.60) >DroYak_CAF1 560 114 - 1 AGUGAUUCUUUUCCGUUUUCAGCGGCUUGGUCGGUCCCGGCGACGUGACUCCGGAUGCUGCUUUGGGCGGAGUGGGAGGCAGUUGGUGCAGGGGUGCCAGA-GGCUCUCCCGCUA ...........(((((((..((((((.(((..((((.((....)).)))))))...))))))..)))))))(((((((((..((((..(....)..)))).-.)).))))))).. ( -54.40) >DroPer_CAF1 100011 106 - 1 UAUGGUUCUUCUCCGUCUUGAGCGGCUUGGCCGCUGCUGUGGGGGAGAGAGCGGCCGCAGCCUUGGGCGGCGUCGGCGGCAGUUGUUGCAGCGGCGCCACGGGGCU--------- ....(((((.((((.((..(((((((...)))))).)...)).)))))))))......(((((((((((.(((..(((((....))))).))).)))).)))))))--------- ( -54.60) >consensus AGUGAUUCUUUUCCGUUUUGAGCGGCUUGGCCGGUCCCGGCGACGUGACUCCGGAAGCUGCUUUGGGCGGAGUGGGUGGCAGUUGGUGCAGGGGUGCCAGA_GCCUCUCCCGCUA .((.((((..((((((((.(((((((....((((..(((....)).)...))))..))))))).)))))))).)))).))...((((((....))))))................ (-29.15 = -30.35 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:36 2006