Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,945,931 – 2,946,025 |
Length | 94 |
Max. P | 0.672143 |
Location | 2,945,931 – 2,946,025 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 88.34 |
Mean single sequence MFE | -14.77 |
Consensus MFE | -10.21 |
Energy contribution | -11.21 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.65 |
Structure conservation index | 0.69 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.672143 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2945931 94 + 22407834 ACUACUACCACUACUAAACCUUAAAAACCGGGCAAAAUCAAAUGCAAACAUUUGCACAAUUCUAACGCCCCCGCUGA--CCCCGUAAAAAAACGUU .............................((((.........(((((....)))))..........)))).......--...(((......))).. ( -10.51) >DroEre_CAF1 63077 93 + 1 ACUACUACCACUACUAAACCUUAAAAACCGGGCAAAAUCAAAUGCAAACAUUUGCACAACUCUAACGCCCCCGCUUCCGCCCCGCAAAA---CGGG .............................((((.........(((((....)))))..........))))..((....))((((.....---)))) ( -15.01) >DroYak_CAF1 63179 91 + 1 ACUACUACCACUACUAAACCUUAAAAACCGGGCAAAAUCAAAUGCAAACAUUUGCACGAUUUUGACGCCCCCCCUUU--CCCCGCAAAA---AGGG .............................((((((((((...(((((....))))).))))))...)))).((((((--........))---)))) ( -18.80) >consensus ACUACUACCACUACUAAACCUUAAAAACCGGGCAAAAUCAAAUGCAAACAUUUGCACAAUUCUAACGCCCCCGCUUA__CCCCGCAAAA___CGGG .............................((((.........(((((....)))))..........))))..........((((........)))) (-10.21 = -11.21 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:33 2006