Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,944,235 – 2,944,355 |
Length | 120 |
Max. P | 0.812383 |
Location | 2,944,235 – 2,944,355 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.27 |
Mean single sequence MFE | -43.12 |
Consensus MFE | -33.74 |
Energy contribution | -35.30 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.03 |
Mean z-score | -1.84 |
Structure conservation index | 0.78 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.812383 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2944235 120 - 22407834 GGAACCGAGGAGCUGGAGCUGCGGCAUCUGCUUCGCUUGGCUUGGAGUGCAGCGCUUAGAUUCACUCGAGCCGAGAAUGGCAGAGGACAACGAUGUCCUUUUGGGCGUAUUCUCAUGGAA ....(((((((((....))((((.(.((((((...(((((((((.((((...(.....)...)))))))))))))...))))))(((((....))))).....).)))))))))..)).. ( -46.50) >DroSim_CAF1 61119 120 - 1 GGAACCGAGGAGCUGGAGCUGCGGCAUCUGCUUGGCUUGGCUUGGAGUGCAGCGCUUAGAUUCACUCGAGCCGAGAAUGGCAGAGGACAACGAUGUCCUUUUGGGCGUAUUCUCAUGGAA ....(((((((((....))((((.(.((((((...(((((((((.((((...(.....)...)))))))))))))...))))))(((((....))))).....).)))))))))..)).. ( -46.50) >DroEre_CAF1 61480 96 - 1 -----------------------GCAUCUGCUUCGCUUGGCUUGGAGUGCAGCGCUUAGAUUCACUCGAGCCGAGAAUG-CGGAGGACACCGAUGUCCUUUUGAACGUAUUCUCAUGGAA -----------------------((....))((((...((((((.((((...(.....)...))))))))))(((((((-(((((((((....))))))).....))))))))).)))). ( -35.20) >DroYak_CAF1 61576 114 - 1 GGUACCGAGGAG------CUGCGGCAUCUGCAUCGCUUGGCUUGGAGUGCAGCGCUUAGAUUCACUCGAGCCGAGAAUGGCAGAGGACAACGAUGUCCUUUUGGGCGUAUUCUCAUGGAA ....(((((((.------.((((.(.(((((....(((((((((.((((...(.....)...)))))))))))))....)))))(((((....))))).....).)))))))))..)).. ( -44.30) >consensus GGAACCGAGGAG______CUGCGGCAUCUGCUUCGCUUGGCUUGGAGUGCAGCGCUUAGAUUCACUCGAGCCGAGAAUGGCAGAGGACAACGAUGUCCUUUUGGGCGUAUUCUCAUGGAA ......(((((...............((((((...(((((((((.((((...(.....)...)))))))))))))...))))))(((((....)))))...........)))))...... (-33.74 = -35.30 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:32 2006