Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,941,142 – 2,941,252 |
Length | 110 |
Max. P | 0.998429 |
Location | 2,941,142 – 2,941,252 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.59 |
Mean single sequence MFE | -34.64 |
Consensus MFE | -19.65 |
Energy contribution | -21.71 |
Covariance contribution | 2.06 |
Combinations/Pair | 1.13 |
Mean z-score | -2.81 |
Structure conservation index | 0.57 |
SVM decision value | 3.10 |
SVM RNA-class probability | 0.998429 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2941142 110 + 22407834 GUACAGACAGACAGACGAAAGUGUGUACUGUGCACGCUGCCAUCCGA-AGGAUGUUUGUUGUGGGAAAUGGCGGGAAAUGGUGGAAAGUGG--U-GGUGGCAGCAGGCGAGGUG------ ((((((....(((.((....)).))).))))))..((((((((((..-..)..((((.((((.(....).)))).))))............--.-)))))))))..........------ ( -36.70) >DroSim_CAF1 58126 100 + 1 GCACGGACAGACAGACGAAAG----UACUGUGCGCGCUGCCAUCCGA-AGGAUGUUUGUUGUGGGAAAUGGCGGGAAA---------GUGGGCUGGCUGGCAGCAGGACACACG------ ((.((.((((....((....)----).)))).)).))((((((((..-(.(((....))).).)))..))))).....---------(((.((((.....))))....)))...------ ( -31.30) >DroEre_CAF1 58531 84 + 1 GUAC----AGACAGACGAAAG----UACUGUGCGCGCUGCCAUCCAA-AGGAUGUUUGUUGUGGGAA----------AUGGUGGAAAAUGG----GGUGGCGGCAGG------------- ((((----((....((....)----).))))))..((((((((((..-......((..(..(.....----------)..)..)).....)----)))))))))...------------- ( -33.72) >DroYak_CAF1 58535 108 + 1 GUAC----AGACAGACGAAAG----UACUGUGCGCGCUGCCAUCCAAAAGGAUGUUUGUUGUGGGAAAUGGCGGGAAAUGGUGGAAAAUGG----GGUGGCAGCAGGACACACGGCGAGG ((((----((....((....)----).))))))((((((((((((.......(((((.((((.(....).)))).)))))..........)----))))))))).(......).)).... ( -36.83) >consensus GUAC____AGACAGACGAAAG____UACUGUGCGCGCUGCCAUCCAA_AGGAUGUUUGUUGUGGGAAAUGGCGGGAAAUGGUGGAAAAUGG____GGUGGCAGCAGGACACACG______ ((((((.........(....)......))))))..((((((((((....)))).(((((..(.....)..))))).......................))))))................ (-19.65 = -21.71 + 2.06)
Location | 2,941,142 – 2,941,252 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.59 |
Mean single sequence MFE | -21.57 |
Consensus MFE | -12.40 |
Energy contribution | -12.89 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.67 |
Structure conservation index | 0.57 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2941142 110 - 22407834 ------CACCUCGCCUGCUGCCACC-A--CCACUUUCCACCAUUUCCCGCCAUUUCCCACAACAAACAUCCU-UCGGAUGGCAGCGUGCACAGUACACACUUUCGUCUGUCUGUCUGUAC ------......((.((((((((((-.--...........................................-..)).)))))))).))((((.(((.((........)).))))))).. ( -23.85) >DroSim_CAF1 58126 100 - 1 ------CGUGUGUCCUGCUGCCAGCCAGCCCAC---------UUUCCCGCCAUUUCCCACAACAAACAUCCU-UCGGAUGGCAGCGCGCACAGUA----CUUUCGUCUGUCUGUCCGUGC ------...(((..((((.....).)))..)))---------......(((((((.................-..))))))).(((((.((((.(----(........)))))).))))) ( -24.41) >DroEre_CAF1 58531 84 - 1 -------------CCUGCCGCCACC----CCAUUUUCCACCAU----------UUCCCACAACAAACAUCCU-UUGGAUGGCAGCGCGCACAGUA----CUUUCGUCUGUCU----GUAC -------------...((.((((..----(((...........----------...................-.))).)))).))(((.((((.(----(....)))))).)----)).. ( -15.48) >DroYak_CAF1 58535 108 - 1 CCUCGCCGUGUGUCCUGCUGCCACC----CCAUUUUCCACCAUUUCCCGCCAUUUCCCACAACAAACAUCCUUUUGGAUGGCAGCGCGCACAGUA----CUUUCGUCUGUCU----GUAC .......((((((...(((((((..----(((..........................................))).))))))))))))).(((----(............----)))) ( -22.55) >consensus ______CGUGUGUCCUGCUGCCACC____CCACUUUCCACCAUUUCCCGCCAUUUCCCACAACAAACAUCCU_UCGGAUGGCAGCGCGCACAGUA____CUUUCGUCUGUCU____GUAC ................((((((..........................(........).........((((....))))))))))..(.((((.............)))))......... (-12.40 = -12.89 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:26 2006