Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,937,253 – 2,937,372 |
Length | 119 |
Max. P | 0.876528 |
Location | 2,937,253 – 2,937,372 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.79 |
Mean single sequence MFE | -22.73 |
Consensus MFE | -20.48 |
Energy contribution | -19.28 |
Covariance contribution | -1.20 |
Combinations/Pair | 1.27 |
Mean z-score | -1.41 |
Structure conservation index | 0.90 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.876528 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2937253 119 - 22407834 CACAACGCUCACAAGUUCAAAGCAGUGCAAAUGCUUUACCCCA-AUGGCUUAAACUGAUAGUAUUUGCUCUGUUUUCCGUCCACCUUACGGCCAAAUCAAUUAACUUAAUGAAAACUAUU ........(((.(((((.(((((((.(((((((((........-...............))))))))).)))))))((((.......))))...........)))))..)))........ ( -21.60) >DroSec_CAF1 52346 120 - 1 CACAACGCUCACAAGUUCAAAGCAGUGCAAAUGCUUUGCCCCAAAUGGCUUAAACUGAUAGUAUUUGCUCUGCUUUCUGUCCACCUUGCGGCCAAAUCAAUUAACUUAAUGAAAACUAUU ......((.(.((((..((((((((.(((((((((..(((......)))..........))))))))).))))))..)).....)))).)))............................ ( -26.80) >DroSim_CAF1 54349 120 - 1 CACAACGCUCACAAGUUCAAAGCAGUGCAAAUGCUUUGCCCCAAAUGGCUUAAACUGAUAGUAUUUGCUCUGCUUUCUGUCCACCUUGCGGCCAAAUCAAUUAACUUAAUGAAAACUAUU ......((.(.((((..((((((((.(((((((((..(((......)))..........))))))))).))))))..)).....)))).)))............................ ( -26.80) >DroEre_CAF1 54624 115 - 1 CACAACG----CAAGUUCAAAGCAGUGCAAAUGUUUUACUCCA-AUGGCUUAAACUGAUAGUAUUUGCUUUGCUUUCCGUCCACCUUACGGGCAAAUCAAUUAACUUAAUGAAAACUAUU ...(((.----...))).(((((((.(((((((..........-.................))))))).)))))))..((((.......))))........................... ( -18.53) >DroYak_CAF1 54495 115 - 1 CACAACG----CAAGCUGCAAGUAGUGCAAAUGUUUUACUCCA-AAGGCUUAGACUGAUAGUAUUUGCUCUGCUUUCUGUCCACCUUACGGGCAAAUCAAUUAACUUAAUGAAAACUAUU ......(----(.....))((((((.(((((((..(((.((.(-(....)).)).)))...))))))).))))))..(((((.......))))).......................... ( -19.90) >consensus CACAACGCUCACAAGUUCAAAGCAGUGCAAAUGCUUUACCCCA_AUGGCUUAAACUGAUAGUAUUUGCUCUGCUUUCUGUCCACCUUACGGCCAAAUCAAUUAACUUAAUGAAAACUAUU ............(((((.(((((((.((((((((((((..((....))..)))......))))))))).)))))))((((.......))))...........)))))............. (-20.48 = -19.28 + -1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:13 2006