Locus 1054

Sequence ID 2L_DroMel_CAF1
Location 2,937,253 – 2,937,372
Length 119
Max. P 0.876528
window1699

overview

Window 9

Location 2,937,253 – 2,937,372
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.79
Mean single sequence MFE -22.73
Consensus MFE -20.48
Energy contribution -19.28
Covariance contribution -1.20
Combinations/Pair 1.27
Mean z-score -1.41
Structure conservation index 0.90
SVM decision value 0.89
SVM RNA-class probability 0.876528
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2937253 119 - 22407834
CACAACGCUCACAAGUUCAAAGCAGUGCAAAUGCUUUACCCCA-AUGGCUUAAACUGAUAGUAUUUGCUCUGUUUUCCGUCCACCUUACGGCCAAAUCAAUUAACUUAAUGAAAACUAUU
........(((.(((((.(((((((.(((((((((........-...............))))))))).)))))))((((.......))))...........)))))..)))........ ( -21.60)
>DroSec_CAF1 52346 120 - 1
CACAACGCUCACAAGUUCAAAGCAGUGCAAAUGCUUUGCCCCAAAUGGCUUAAACUGAUAGUAUUUGCUCUGCUUUCUGUCCACCUUGCGGCCAAAUCAAUUAACUUAAUGAAAACUAUU
......((.(.((((..((((((((.(((((((((..(((......)))..........))))))))).))))))..)).....)))).)))............................ ( -26.80)
>DroSim_CAF1 54349 120 - 1
CACAACGCUCACAAGUUCAAAGCAGUGCAAAUGCUUUGCCCCAAAUGGCUUAAACUGAUAGUAUUUGCUCUGCUUUCUGUCCACCUUGCGGCCAAAUCAAUUAACUUAAUGAAAACUAUU
......((.(.((((..((((((((.(((((((((..(((......)))..........))))))))).))))))..)).....)))).)))............................ ( -26.80)
>DroEre_CAF1 54624 115 - 1
CACAACG----CAAGUUCAAAGCAGUGCAAAUGUUUUACUCCA-AUGGCUUAAACUGAUAGUAUUUGCUUUGCUUUCCGUCCACCUUACGGGCAAAUCAAUUAACUUAAUGAAAACUAUU
...(((.----...))).(((((((.(((((((..........-.................))))))).)))))))..((((.......))))........................... ( -18.53)
>DroYak_CAF1 54495 115 - 1
CACAACG----CAAGCUGCAAGUAGUGCAAAUGUUUUACUCCA-AAGGCUUAGACUGAUAGUAUUUGCUCUGCUUUCUGUCCACCUUACGGGCAAAUCAAUUAACUUAAUGAAAACUAUU
......(----(.....))((((((.(((((((..(((.((.(-(....)).)).)))...))))))).))))))..(((((.......))))).......................... ( -19.90)
>consensus
CACAACGCUCACAAGUUCAAAGCAGUGCAAAUGCUUUACCCCA_AUGGCUUAAACUGAUAGUAUUUGCUCUGCUUUCUGUCCACCUUACGGCCAAAUCAAUUAACUUAAUGAAAACUAUU
............(((((.(((((((.((((((((((((..((....))..)))......))))))))).)))))))((((.......))))...........)))))............. (-20.48 = -19.28 +  -1.20) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:13 2006