Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,932,725 – 2,932,842 |
Length | 117 |
Max. P | 0.849237 |
Location | 2,932,725 – 2,932,842 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.71 |
Mean single sequence MFE | -24.19 |
Consensus MFE | -13.73 |
Energy contribution | -14.97 |
Covariance contribution | 1.24 |
Combinations/Pair | 1.16 |
Mean z-score | -2.22 |
Structure conservation index | 0.57 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.849237 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2932725 117 - 22407834 UUAAAGCUGCAACCACC---CACUGAGACCACCCAGUUGUACCAGCAAACAGUCACUUCCGGUUGCCUUCAUCUUUUCACUGCGGAUUAUUGCAAUAGCAAUCCCUCGCAGUUUCCACUG ........((((((...---.((((........))))(((....))).............))))))............(((((((...(((((....)))))...)))))))........ ( -25.90) >DroSec_CAF1 50363 107 - 1 UUAAAGCUGCAAC-------------GACCACCCAGUUGUACCAGCAAACAGUCAUUUCCGGUUGCCUUCAUCUCUUCACUGCGGAUUAUUGCAAUAGCAAUUCUUCGCAGUUUCCACUA .....((((..((-------------(((......)))))..))))...((..(......)..)).............((((((((..(((((....)))))..))))))))........ ( -27.60) >DroSim_CAF1 51998 120 - 1 UUAAAGCUGCAACCACCACACACUGCGACCACCCAGUUGUAACAGCAAACAGUCAUUUCCGGUUGCCUUCAUCUCCUCACUGCGGAUUACUGCAAUAGCAAUUCUUCGCAGUUUCCACUA ........((((((.........((((((......))))))...((.....)).......))))))............((((((((..(.(((....))).)..))))))))........ ( -25.80) >DroEre_CAF1 52195 104 - 1 UUUAAGCUGCCACCGCC---CACUGAGACUACA-------------ACCCAGUUAUUUCCGGUUGUCUUCAUCUGUUCAUUCUGGCUUAUUGCAAUAGCAAUCCUUCGCAGUUUCUACAA ...(((((((....(((---.((.((((..(((-------------(((...........))))))..)).)).)).......)))..(((((....))))).....)))))))...... ( -21.00) >DroYak_CAF1 52083 117 - 1 UUAAAGCUGCCACCACC---CACUGAGACUACCCAGUUUUACCAGCAAACAUUUAUUUCCGGUUGCCUUCAUCUGUUCUCUCUGGAUUAUUGCAAUAGCAAUCCUUCGCAGUUUCUACAA ...(((((((......(---((..((((.....(((........((((.(..........).))))......))).))))..)))...(((((....))))).....)))))))...... ( -20.64) >consensus UUAAAGCUGCAACCACC___CACUGAGACCACCCAGUUGUACCAGCAAACAGUCAUUUCCGGUUGCCUUCAUCUCUUCACUGCGGAUUAUUGCAAUAGCAAUCCUUCGCAGUUUCCACUA ........((((((..............................................))))))............((((((((..(((((....)))))..))))))))........ (-13.73 = -14.97 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:09 2006