Locus 1051

Sequence ID 2L_DroMel_CAF1
Location 2,932,418 – 2,932,534
Length 116
Max. P 0.859293
window1694

overview

Window 4

Location 2,932,418 – 2,932,534
Length 116
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.30
Mean single sequence MFE -27.84
Consensus MFE -23.19
Energy contribution -23.55
Covariance contribution 0.36
Combinations/Pair 1.04
Mean z-score -1.61
Structure conservation index 0.83
SVM decision value 0.82
SVM RNA-class probability 0.859293
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2932418 116 - 22407834
G----ACUUUGCUUUGAUUAUCUGAAGAAACUGUAGGCUAUAAAUAUUAAUUAAGGCAAGUGGAAUUAGCAGAUGAUGCUAUAAUCAGCAUCACACAUGGCUAACUUCAACGCGAGGGUU
.----.((((((.((((..(((((..((..(..(..(((.(((.......))).)))..)..)..))..)))))((((((......))))))..............)))).))))))... ( -27.40)
>DroSec_CAF1 50079 114 - 1
G----ACUUUGAUUUGAUUAUCUGAAGACACGGCCGCCUAUAAAUAUUAAUUAAGGCAACUGGAAUUAGCAGAUGAUGCUAUAAUCAGCAUCACACAUGGCUAACUCCA--GCGAGGGUU
.----.(((((((......))).))))....((((((((.(((.......)))))))..(((((.(((((...(((((((......)))))))......))))).))))--)....)))) ( -31.50)
>DroSim_CAF1 51710 118 - 1
GAGAGAGUUUGCUUUGAUUAUCUGAAGAAACGGCAGCCUAUAAAUAUUAAUUAAGGCAACUGGAAUUAGCAGAUGAUGCUAUAAUCAGCAUCACACAUGGCUAACUCCA--GCGAGGGUU
........((((((((((((((....))...((...)).........))))))))))))(((((.(((((...(((((((......)))))))......))))).))))--)........ ( -31.10)
>DroEre_CAF1 51897 111 - 1
G----ACUUUGCUUUGAUUAUAUGAAAA---UGUAGCCUAUAAAUAUUAAUUAAGGCAACUGGAAUUAGCAGAUGAGGCUAUAAUCAGCAUCACACAUGGCUAACUUCA--GCGAGGGUU
.----.((((((......(((((....)---))))((((.(((.......)))))))...((((.(((((...(((.(((......))).)))......))))).))))--))))))... ( -25.60)
>DroYak_CAF1 51778 111 - 1
G----ACUUUGCUUUGAUUAUCUGAAAA---UGUAGCCUAUAAAUAUUAAUUAAGGCAAAUGGAAUUAGCAGAUGAGGCUAUAAUCAGCAUCACACAUGGCUAACUUCA--GCGAGGGUU
.----.((((((................---....((((.(((.......)))))))...((((.(((((...(((.(((......))).)))......))))).))))--))))))... ( -23.60)
>consensus
G____ACUUUGCUUUGAUUAUCUGAAGA_ACUGUAGCCUAUAAAUAUUAAUUAAGGCAACUGGAAUUAGCAGAUGAUGCUAUAAUCAGCAUCACACAUGGCUAACUUCA__GCGAGGGUU
........((((((((((((...........................)))))))))))).((((.(((((...(((((((......)))))))......))))).))))........... (-23.19 = -23.55 +   0.36) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:08 2006